RNA id: TU498780



Basic Information


Item Value
RNA id TU498780
length 664
lncRNA type intronic
GC content 0.38
exon number 2
gene id G434437
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 7061080 ~ 7062538 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTCTTTAGAGAGCGTCATATGTTTGCTGAGAGTAAAGGAGAGGTTGTGCAGAAAGACTTTATATGGAAACGGTTTGGATGTGATTTATGCAAATTTCTAACTTTGTGTACATAGTTGCTCATTTAGAATACTTTAGAATATTTATTAACAGAACGAGTTTAGGAACAAATTCATGTGTGTACGCATGTGTTGTGAATTAGGAGGTAATTTTTCTCAAAAGGTTCTGTGCATATAGATACAAATAATCCACGCAATTATTCGTGAATGGGACCCATTTTCTGTATGAACACCTGTAACCACTAGGTATGTCCCGAGCCGATCTCAAGGATTGGTATCAGGGCCGACTAAGCATGTTTTTACCTGATCGTATCAGCTATCCAAAAGCCCAAAGTATACTTTTTTTAAATGTACGCTAGTGTACGCGCACAGTCGAATGCACAGCCTTGCAAAGTATATTTCATTTCACTCTTACGCGTACATAGGCGTTTGACGCATGTGCAATGTCTATGTAGGCCTCCATTTTCGCTGTAGCTTGCATGTAAATATTAAAGTGATAGATGCCCCCCTTTTTACATTTTGAGTCCCTGCCCCTGAGAAACTTTCTGCACATCCCTGTATATTGGATTGAATAACCTGAATAACTTTTAATAACTAATGTACTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU498741 lncRNA upstream 66543 6994310 ~ 6994537 (+) True G434400
TU498740 lncRNA upstream 68813 6991961 ~ 6992267 (+) True G434399
TU498660 lncRNA upstream 219383 6841493 ~ 6841697 (+) True G434321
TU498657 lncRNA upstream 223033 6837739 ~ 6838047 (+) True G434318
TU498204 lncRNA upstream 243210 6817368 ~ 6817870 (+) True G433913
TU498864 lncRNA downstream 31171 7093709 ~ 7093927 (+) True G434518
TU498878 lncRNA downstream 45794 7108332 ~ 7108721 (+) True G434531
TU498946 lncRNA downstream 123825 7186363 ~ 7186833 (+) True G434596
TU498979 lncRNA downstream 154712 7217250 ~ 7217472 (+) True G434629
TU498993 lncRNA downstream 176337 7238875 ~ 7239139 (+) True G434643
CI01000306_06722271_06723631.mRNA mRNA upstream 337172 6722271 ~ 6723908 (+) True CI01000306_06722271_06723631
CI01000306_06592383_06685440.mRNA mRNA upstream 375640 6592383 ~ 6685440 (+) True CI01000306_06592383_06685440
CI01000306_06564978_06573507.mRNA mRNA upstream 487289 6564978 ~ 6573791 (+) True CI01000306_06564978_06573507
CI01000306_06523680_06551842.mRNA mRNA upstream 508991 6523090 ~ 6552089 (+) True CI01000306_06523680_06551842
CI01000306_06479829_06485192.mRNA mRNA upstream 575888 6479829 ~ 6485192 (+) True CI01000306_06479829_06485192
CI01000306_07386318_07389827.mRNA mRNA downstream 323780 7386318 ~ 7390040 (+) True CI01000306_07386318_07389827
CI01000306_07492176_07535995.mRNA mRNA downstream 427755 7490293 ~ 7536956 (+) True CI01000306_07492176_07535995
CI01000306_07559884_07560060.mRNA mRNA downstream 497346 7559884 ~ 7560100 (+) True CI01000306_07559884_07560060
CI01000306_07609108_07637728.mRNA mRNA downstream 546570 7609108 ~ 7637836 (+) True CI01000306_07609108_07637728
CI01000306_07640049_07676915.mRNA mRNA downstream 577511 7640049 ~ 7677784 (+) True CI01000306_07640049_07676915
TU498010 other upstream 931302 6108611 ~ 6129778 (+) True G433724
TU497968 other upstream 952905 6106983 ~ 6107080 (+) True G433684
TU497329 other upstream 1074792 5980513 ~ 5980671 (+) True G433126
TU497140 other upstream 1400911 5658928 ~ 5660169 (+) True G432958
TU496834 other upstream 2538544 4522210 ~ 4522536 (+) True G432678
TU498892 other downstream 56779 7119317 ~ 7119859 (+) True G434545
TU499876 other downstream 2163027 9225565 ~ 9226506 (+) False CI01000306_09225597_09230504
TU499848 other downstream 2211361 9273899 ~ 9277829 (+) False G435449
TU499849 other downstream 2211361 9273899 ~ 9281923 (+) False G435449
TU500012 other downstream 2650311 9712849 ~ 9737144 (+) True G435590

Expression Profile