RNA id: TU498878


Basic Information

Item Value
RNA id TU498878
length 390
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G434531
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 7108332 ~ 7108721 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGAATTCAGAAACTGTGTTATTAGCAATAACAAAAATATAAGCTGTTTAAACATTGGCAATAAATAAGTGATTAATGCATGCAAATTATTACATATAGCCCCTTTTTAGGGCAGTCATGGATAGAGAGTCGGACTTGTAACCTAAAGGTCATGGGTTCGAGTCTCAGGTCCGGCAGGGATTGTCGGTGAGGGGAGTGAATGTCCAGCGCTCTCTCCACCCTCAATACCACGACTGAGGTGAGACCCTTGAGCAAGGCACCGTACCCCCAACTGCTCCCCGGGCGCCGCAGCATTGGCTGCCCACTGCTCCGGGTGTGTGTTCACGGTGTGTGTGTGTGTGTGTGTTCACTGCTGTGTGTGTGCACTTGGATGGGTTAAATGCAGAGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU498864 lncRNA upstream 14405 7093709 ~ 7093927 (+) True G434518
TU498780 lncRNA upstream 45794 7061080 ~ 7062538 (+) True G434437
TU498741 lncRNA upstream 113795 6994310 ~ 6994537 (+) True G434400
TU498740 lncRNA upstream 116065 6991961 ~ 6992267 (+) True G434399
TU498660 lncRNA upstream 266635 6841493 ~ 6841697 (+) True G434321
TU498946 lncRNA downstream 77642 7186363 ~ 7186833 (+) True G434596
TU498979 lncRNA downstream 108529 7217250 ~ 7217472 (+) True G434629
TU498993 lncRNA downstream 130154 7238875 ~ 7239139 (+) True G434643
TU498995 lncRNA downstream 134964 7243685 ~ 7244333 (+) True G434645
TU498997 lncRNA downstream 137579 7246300 ~ 7246584 (+) True G434647
CI01000306_06722271_06723631.mRNA mRNA upstream 384424 6722271 ~ 6723908 (+) True CI01000306_06722271_06723631
CI01000306_06592383_06685440.mRNA mRNA upstream 422892 6592383 ~ 6685440 (+) True CI01000306_06592383_06685440
CI01000306_06564978_06573507.mRNA mRNA upstream 534541 6564978 ~ 6573791 (+) True CI01000306_06564978_06573507
CI01000306_06523680_06551842.mRNA mRNA upstream 556243 6523090 ~ 6552089 (+) True CI01000306_06523680_06551842
CI01000306_06479829_06485192.mRNA mRNA upstream 623140 6479829 ~ 6485192 (+) True CI01000306_06479829_06485192
CI01000306_07386318_07389827.mRNA mRNA downstream 277597 7386318 ~ 7390040 (+) True CI01000306_07386318_07389827
CI01000306_07492176_07535995.mRNA mRNA downstream 381572 7490293 ~ 7536956 (+) True CI01000306_07492176_07535995
CI01000306_07559884_07560060.mRNA mRNA downstream 451163 7559884 ~ 7560100 (+) True CI01000306_07559884_07560060
CI01000306_07609108_07637728.mRNA mRNA downstream 500387 7609108 ~ 7637836 (+) True CI01000306_07609108_07637728
CI01000306_07640049_07676915.mRNA mRNA downstream 531328 7640049 ~ 7677784 (+) True CI01000306_07640049_07676915
TU498010 other upstream 978554 6108611 ~ 6129778 (+) True G433724
TU497968 other upstream 1000157 6106983 ~ 6107080 (+) True G433684
TU497329 other upstream 1122044 5980513 ~ 5980671 (+) True G433126
TU497140 other upstream 1448163 5658928 ~ 5660169 (+) True G432958
TU496834 other upstream 2585796 4522210 ~ 4522536 (+) True G432678
TU498892 other downstream 10596 7119317 ~ 7119859 (+) True G434545
TU499876 other downstream 2116844 9225565 ~ 9226506 (+) False CI01000306_09225597_09230504
TU499848 other downstream 2165178 9273899 ~ 9277829 (+) False G435449
TU499849 other downstream 2165178 9273899 ~ 9281923 (+) False G435449
TU500012 other downstream 2604128 9712849 ~ 9737144 (+) True G435590

Expression Profile