RNA id: TU498993


Basic Information

Item Value
RNA id TU498993
length 265
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G434643
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 7238875 ~ 7239139 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGTACTCTCCCAGATAATGGGAGTCCTGCAAGTGTGTGCAATACATCTTAAACATCGGTCCTTCACCTTTCATTGTAAACTATCCATTTGGGTAGAACAGTGTTGTGGCAGCCGTTTTCCCCTGAGCGTTATATGCGCCCTGTCGTTATCCTTTCATATGATGTCTTTAAAATGAGCGGTGTGCTCCGGCGTGACACGTTCGTGATTGCGCCTGGTTAATCTCCCGATCAGGACCGTCTATCTGCCGCGTGACCACATTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU498979 lncRNA upstream 21403 7217250 ~ 7217472 (+) True G434629
TU498946 lncRNA upstream 52042 7186363 ~ 7186833 (+) True G434596
TU498878 lncRNA upstream 130154 7108332 ~ 7108721 (+) True G434531
TU498864 lncRNA upstream 144948 7093709 ~ 7093927 (+) True G434518
TU498780 lncRNA upstream 176337 7061080 ~ 7062538 (+) True G434437
TU498995 lncRNA downstream 4546 7243685 ~ 7244333 (+) True G434645
TU498997 lncRNA downstream 7161 7246300 ~ 7246584 (+) True G434647
TU499004 lncRNA downstream 13600 7252739 ~ 7252942 (+) True G434654
TU499008 lncRNA downstream 16766 7255905 ~ 7256118 (+) True G434658
TU499009 lncRNA downstream 17699 7256838 ~ 7257037 (+) True G434659
CI01000306_06722271_06723631.mRNA mRNA upstream 514967 6722271 ~ 6723908 (+) True CI01000306_06722271_06723631
CI01000306_06592383_06685440.mRNA mRNA upstream 553435 6592383 ~ 6685440 (+) True CI01000306_06592383_06685440
CI01000306_06564978_06573507.mRNA mRNA upstream 665084 6564978 ~ 6573791 (+) True CI01000306_06564978_06573507
CI01000306_06523680_06551842.mRNA mRNA upstream 686786 6523090 ~ 6552089 (+) True CI01000306_06523680_06551842
CI01000306_06479829_06485192.mRNA mRNA upstream 753683 6479829 ~ 6485192 (+) True CI01000306_06479829_06485192
CI01000306_07386318_07389827.mRNA mRNA downstream 147179 7386318 ~ 7390040 (+) True CI01000306_07386318_07389827
CI01000306_07492176_07535995.mRNA mRNA downstream 251154 7490293 ~ 7536956 (+) True CI01000306_07492176_07535995
CI01000306_07559884_07560060.mRNA mRNA downstream 320745 7559884 ~ 7560100 (+) True CI01000306_07559884_07560060
CI01000306_07609108_07637728.mRNA mRNA downstream 369969 7609108 ~ 7637836 (+) True CI01000306_07609108_07637728
CI01000306_07640049_07676915.mRNA mRNA downstream 400910 7640049 ~ 7677784 (+) True CI01000306_07640049_07676915
TU498892 other upstream 119016 7119317 ~ 7119859 (+) True G434545
TU498010 other upstream 1109097 6108611 ~ 6129778 (+) True G433724
TU497968 other upstream 1130700 6106983 ~ 6107080 (+) True G433684
TU497329 other upstream 1252587 5980513 ~ 5980671 (+) True G433126
TU497140 other upstream 1578706 5658928 ~ 5660169 (+) True G432958
TU499876 other downstream 1986426 9225565 ~ 9226506 (+) False CI01000306_09225597_09230504
TU499848 other downstream 2034760 9273899 ~ 9277829 (+) False G435449
TU499849 other downstream 2034760 9273899 ~ 9281923 (+) False G435449
TU500012 other downstream 2473710 9712849 ~ 9737144 (+) True G435590
TU500060 other downstream 2621074 9860213 ~ 9860441 (+) False G435631

Expression Profile