RNA id: TU499032


Basic Information

Item Value
RNA id TU499032
length 308
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G434681
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 7244008 ~ 7244315 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGATTGGTTCTTGTTTTGTTAGTGCTGTTTGTTGTGATAGTCATGTGCTCCCCAGTGCCATTGATTTAGTAGGGCTGGGACAATAAATCATTGCAATAAATCGAGAAATGGTTCTGGATTGATTCTGAGATTTTCCGAATGTATCGCAATTCTCTCTCGAATCGATTCTGTTTTTAACAGCAGATGGCACTGCGTGCTTTAGAAACAGCCATACTCTGGTTGCTTCCAATTCCTTTCACACACCAGTTGAACCTTCTATAAAATAATCATTCAAAAAGTTCGAAAAGGTTGAAGCGAATTACAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU498961 lncRNA downstream 39030 7198106 ~ 7204978 (-) True G434611
TU498948 lncRNA downstream 56867 7186712 ~ 7187141 (-) True G434598
TU498947 lncRNA downstream 57348 7186427 ~ 7186660 (-) True G434597
TU498929 lncRNA downstream 77013 7166795 ~ 7166995 (-) True G434579
TU498895 lncRNA downstream 123352 7120226 ~ 7120656 (-) True G434548
TU499037 lncRNA upstream 11653 7255968 ~ 7256267 (-) True G434686
TU499023 lncRNA upstream 13780 7258095 ~ 7258435 (-) True G434673
TU499041 lncRNA upstream 21599 7265914 ~ 7266253 (-) True G434690
TU499067 lncRNA upstream 34701 7279016 ~ 7279280 (-) True G434716
TU499102 lncRNA upstream 66499 7310814 ~ 7311045 (-) True G434747
CI01000306_06998286_07073243.mRNA mRNA downstream 170765 6998286 ~ 7073243 (-) True CI01000306_06998286_07073243
CI01000306_06815523_06829337.mRNA mRNA downstream 414492 6815441 ~ 6829516 (-) True CI01000306_06815523_06829337
CI01000306_06780961_06789374.mRNA mRNA downstream 454414 6780773 ~ 6789594 (-) True CI01000306_06780961_06789374
CI01000306_06776313_06778496.mRNA mRNA downstream 465312 6776114 ~ 6778696 (-) False CI01000306_06776313_06778496
CI01000306_06741870_06743844.mRNA mRNA downstream 500066 6741859 ~ 6743942 (-) True CI01000306_06741870_06743844
CI01000306_07331303_07340271.mRNA mRNA upstream 86637 7330952 ~ 7341271 (-) True CI01000306_07331303_07340271
CI01000306_07561305_07566290.mRNA mRNA upstream 316236 7560551 ~ 7566933 (-) True CI01000306_07561305_07566290
CI01000306_07680537_07684881.mRNA mRNA upstream 435553 7679868 ~ 7685987 (-) True CI01000306_07680537_07684881
CI01000306_07687805_07693178.mRNA mRNA upstream 443291 7687606 ~ 7693178 (-) True CI01000306_07687805_07693178
CI01000306_07694770_07711329.mRNA mRNA upstream 450377 7694692 ~ 7712134 (-) True CI01000306_07694770_07711329
TU498677 other downstream 377072 6866656 ~ 6866936 (-) True G434338
TU498395 other downstream 791757 6437406 ~ 6452251 (-) True G434086
TU498319 other downstream 882365 6355180 ~ 6361643 (-) True G434016
TU498286 other downstream 1046798 6196107 ~ 6197210 (-) True G433985
TU497952 other downstream 1202725 6041014 ~ 6041283 (-) True G433670
TU500988 other upstream 2411964 9656279 ~ 9671776 (-) True G436446
TU501173 other upstream 2590710 9835025 ~ 9836323 (-) True G436626
TU501193 other upstream 2777833 10022148 ~ 10025375 (-) True G436643

Expression Profile