RNA id: TU500534


Basic Information

Item Value
RNA id TU500534
length 854
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G436032
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 7874765 ~ 7875618 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAAGCATGATGTAACATTCTCAGAATGATAATCAGAGAGAATCATGCAGACAGCAAAATCATTACACAACAGGTGAACAAAGAATCCACAGGGAAATGCAAAAATATTACTGATAAAGTCAAAGGATTGCTACTTGAGATCCACCTCAGGAGGATAATTGAAAGGAAAAGACTACTGTGTATGACAATGTTACTTTTTGAATGAACTATCCCTTTAAGAGCATACTTTTTTTGCAAATTCAATTTGTTTGTGAAAATTTCTTATTTATTTTTTTCACAGGAAACTAAAACCACAGTAAATCTACTTGCAAATCCTGAAATATGTTAAGCAACACAATTGTTTTCAACATCGATGATAATAATAAATGTTTCTATAGCAGCAAATCAGCATATTAGAATATGCTTGAAGAAACCGACCTGCAGAGTACTGTGAAGTGTTTTAGGCACTTGTGTAAAAATGCTGTAAAGTGAGGATGCTTTCAAAAATACTGTCATAAATAGATTTTATTTAACAATTAACTTCTATTAACCAAATCAAATCAATATTTGGTGTGATCACCCTATGCGTTTAAAACAGCTTTTGTCCAGGAACACTTGCACATCATTTTTCAGGTAGCTTTGCAGGTCGATGTCTTCAAGCATCTTGGAGACATGCACGGCCACAGTTCTTCTGGATTTAGTTTGTCTCAGTTTCATCTGTTTCTTCATGTAATCACAGACAGATTTAATGATGGTGAGATCACATCTTCGTGTGAAGCACCAGCTGTTGTCAGACTCCTTGTGCATTCAAAAATCTCACTGGATTATTACGAATAATGGCAAAATGAATGTTTGAAAAAATATATAAATAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500444 lncRNA downstream 331154 7543374 ~ 7543611 (-) True G435967
TU500438 lncRNA downstream 337779 7534947 ~ 7536986 (-) True G435961
TU499208 lncRNA downstream 445492 7428567 ~ 7429273 (-) True G434852
TU499150 lncRNA downstream 488385 7332281 ~ 7386380 (-) True G434794
TU499102 lncRNA downstream 563720 7310814 ~ 7311045 (-) True G434747
TU500397 lncRNA upstream 123392 7999010 ~ 8002976 (-) True G435922
TU500580 lncRNA upstream 279637 8155255 ~ 8155486 (-) True G436076
TU500599 lncRNA upstream 335836 8211454 ~ 8211949 (-) True G436095
TU500602 lncRNA upstream 336829 8212447 ~ 8212968 (-) False G436096
TU500603 lncRNA upstream 336829 8212447 ~ 8212902 (-) False G436096
CI01000306_07856222_07862594.mRNA mRNA downstream 12171 7856042 ~ 7862594 (-) True CI01000306_07856222_07862594
CI01000306_07847872_07854953.mRNA mRNA downstream 19812 7847791 ~ 7854953 (-) True CI01000306_07847872_07854953
CI01000306_07824351_07831998.mRNA mRNA downstream 42767 7824351 ~ 7831998 (-) True CI01000306_07824351_07831998
CI01000306_07820183_07821657.mRNA mRNA downstream 53108 7820139 ~ 7821657 (-) True CI01000306_07820183_07821657
CI01000306_07818710_07819265.mRNA mRNA downstream 55500 7818710 ~ 7819265 (-) True CI01000306_07818710_07819265
CI01000306_07953852_07996146.mRNA mRNA upstream 78194 7953812 ~ 7996268 (-) True CI01000306_07953852_07996146
CI01000306_08004025_08017848.mRNA mRNA upstream 128269 8003887 ~ 8018168 (-) True CI01000306_08004025_08017848
CI01000306_08045293_08057171.mRNA mRNA upstream 169024 8044642 ~ 8057171 (-) True CI01000306_08045293_08057171
CI01000306_08061250_08076179.mRNA mRNA upstream 185632 8061250 ~ 8076179 (-) True CI01000306_08061250_08076179
CI01000306_08077693_08108117.mRNA mRNA upstream 201991 8077609 ~ 8108117 (-) True CI01000306_08077693_08108117
TU498677 other downstream 1007829 6866656 ~ 6866936 (-) True G434338
TU498395 other downstream 1422514 6437406 ~ 6452251 (-) True G434086
TU498319 other downstream 1513122 6355180 ~ 6361643 (-) True G434016
TU498286 other downstream 1677555 6196107 ~ 6197210 (-) True G433985
TU497952 other downstream 1833482 6041014 ~ 6041283 (-) True G433670
TU500988 other upstream 1780661 9656279 ~ 9671776 (-) True G436446
TU501173 other upstream 1959407 9835025 ~ 9836323 (-) True G436626
TU501193 other upstream 2146530 10022148 ~ 10025375 (-) True G436643

Expression Profile