RNA id: TU501037


Basic Information

Item Value
RNA id TU501037
length 642
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G436495
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9286160 ~ 9288190 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTTGTCATAAAGCTTTAATGTATTTTTAGCTTTGGCACTTTGCACAGCAGAATTATCTCTTCTCAGACTCAAACAGCGTTATGATGAATTCAGTATTTGTTCCACTTCCTCTGTATGAGCTCGTCGAGATTGAGTGAGTCAGGTTTCTCAATGTCTAAATGTAAGCATCAAAAATGCTGTTCTTGGACTAGTGAGGAAGTTTTGAACTGTGAATCAACAGTGTGTTTTCATAGTAGGTTTAGTACTAGTATTAGTAGATTTGAATCATCATATGACCACTTTAATGAAAGAAACATTTTATCACCTGAGGGCTGGTACATTGAATTATCAGACATAACGAAAGAGTAAGTTGCTGTGGGATCTGGTGTGTTGTCCTGATGGGAATCTGGGTGTTCGAGGCCCACAGATATGGGCTGAGATGTGGCCGGTACAGAAGTGATCAGAGAATATGTCTCTGCAGGTCCAGAACTCTAAAAAACACAGAAGAATTAAGGTCATGTCCATTTCAGCCATTCTTACTCGTTATGGTATTATAAATATATATTTATTACTTTGTGATTGAAAAGATTAATTACAAAGATACTCACCATACCAATTTCTTGACTGGGCACATCTGATCTTATTGATCTCATTTTATTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501098 lncRNA downstream 25587 9255446 ~ 9260573 (-) True G436555
TU500966 lncRNA downstream 35151 9204059 ~ 9251009 (-) True G436426
TU500952 lncRNA downstream 165169 9120627 ~ 9120991 (-) True G436415
TU500950 lncRNA downstream 169098 9116774 ~ 9117062 (-) True G436413
TU500846 lncRNA downstream 183039 9098472 ~ 9103121 (-) True G436311
TU501011 lncRNA upstream 44783 9332973 ~ 9396739 (-) True G436469
TU501018 lncRNA upstream 217458 9505648 ~ 9562605 (-) True G436476
TU500993 lncRNA upstream 259519 9547709 ~ 9549810 (-) True G436451
TU501146 lncRNA upstream 288058 9576248 ~ 9577239 (-) True G436603
TU501000 lncRNA upstream 295416 9583606 ~ 9585632 (-) True G436458
CI01000306_09067901_09077320.mRNA mRNA downstream 208147 9067235 ~ 9078013 (-) True CI01000306_09067901_09077320
CI01000306_09054500_09064951.mRNA mRNA downstream 221209 9054169 ~ 9064951 (-) True CI01000306_09054500_09064951
CI01000306_09017460_09019520.mRNA mRNA downstream 266291 9017002 ~ 9019869 (-) True CI01000306_09017460_09019520
CI01000306_09013366_09014513.mRNA mRNA downstream 271647 9013071 ~ 9014513 (-) True CI01000306_09013366_09014513
CI01000306_08986353_09011689.mRNA mRNA downstream 274035 8985405 ~ 9012125 (-) True CI01000306_08986353_09011689
CI01000306_09290422_09292579.mRNA mRNA upstream 1914 9290104 ~ 9292819 (-) True CI01000306_09290422_09292579
CI01000306_09309973_09348444.mRNA mRNA upstream 21783 9309973 ~ 9348444 (-) True CI01000306_09309973_09348444
CI01000306_09374084_09380300.mRNA mRNA upstream 85097 9373287 ~ 9380506 (-) True CI01000306_09374084_09380300
CI01000306_09381571_09461159.mRNA mRNA upstream 92997 9381187 ~ 9461573 (-) True CI01000306_09381571_09461159
CI01000306_09522093_09523814.mRNA mRNA upstream 233843 9522033 ~ 9525553 (-) True CI01000306_09522093_09523814
TU498677 other downstream 2419224 6866656 ~ 6866936 (-) True G434338
TU498395 other downstream 2833909 6437406 ~ 6452251 (-) True G434086
TU498319 other downstream 2924517 6355180 ~ 6361643 (-) True G434016
TU498286 other downstream 3088950 6196107 ~ 6197210 (-) True G433985
TU497952 other downstream 3244877 6041014 ~ 6041283 (-) True G433670
TU500988 other upstream 368089 9656279 ~ 9671776 (-) True G436446
TU501173 other upstream 546835 9835025 ~ 9836323 (-) True G436626
TU501193 other upstream 733958 10022148 ~ 10025375 (-) True G436643

Expression Profile