Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU501146 |
| length | 872 |
| lncRNA type | antisense_over |
| GC content | 0.61 |
| exon number | 4 |
| gene id | G436603 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 9576248 ~ 9577239 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU501018 | lncRNA | downstream | 13643 | 9505648 ~ 9562605 (-) | True | G436476 |
| TU500993 | lncRNA | downstream | 26438 | 9547709 ~ 9549810 (-) | True | G436451 |
| TU501011 | lncRNA | downstream | 179509 | 9332973 ~ 9396739 (-) | True | G436469 |
| TU501037 | lncRNA | downstream | 288058 | 9286160 ~ 9288190 (-) | True | G436495 |
| TU501098 | lncRNA | downstream | 315675 | 9255446 ~ 9260573 (-) | True | G436555 |
| TU501000 | lncRNA | upstream | 6367 | 9583606 ~ 9585632 (-) | True | G436458 |
| TU500997 | lncRNA | upstream | 15618 | 9592857 ~ 9593480 (-) | True | G436455 |
| TU500984 | lncRNA | upstream | 16694 | 9593933 ~ 9595287 (-) | True | G436442 |
| TU500991 | lncRNA | upstream | 24110 | 9601349 ~ 9623391 (-) | True | G436449 |
| TU500977 | lncRNA | upstream | 24645 | 9601884 ~ 9612120 (-) | False | G436437 |
| CI01000306_09522093_09523814.mRNA | mRNA | downstream | 50695 | 9522033 ~ 9525553 (-) | True | CI01000306_09522093_09523814 |
| CI01000306_09381571_09461159.mRNA | mRNA | downstream | 114675 | 9381187 ~ 9461573 (-) | True | CI01000306_09381571_09461159 |
| CI01000306_09374084_09380300.mRNA | mRNA | downstream | 195742 | 9373287 ~ 9380506 (-) | True | CI01000306_09374084_09380300 |
| CI01000306_09309973_09348444.mRNA | mRNA | downstream | 227804 | 9309973 ~ 9348444 (-) | True | CI01000306_09309973_09348444 |
| CI01000306_09290422_09292579.mRNA | mRNA | downstream | 283429 | 9290104 ~ 9292819 (-) | True | CI01000306_09290422_09292579 |
| CI01000306_09628418_09641286.mRNA | mRNA | upstream | 50582 | 9627821 ~ 9641286 (-) | True | CI01000306_09628418_09641286 |
| CI01000306_09690177_09739046.mRNA | mRNA | upstream | 112695 | 9689934 ~ 9739046 (-) | True | CI01000306_09690177_09739046 |
| CI01000306_09753380_09774568.mRNA | mRNA | upstream | 175129 | 9752368 ~ 9774784 (-) | True | CI01000306_09753380_09774568 |
| CI01000306_09801952_09806496.mRNA | mRNA | upstream | 224708 | 9801947 ~ 9808800 (-) | True | CI01000306_09801952_09806496 |
| CI01000306_09825468_09827244.mRNA | mRNA | upstream | 247336 | 9824575 ~ 9827282 (-) | True | CI01000306_09825468_09827244 |
| TU498677 | other | downstream | 2709312 | 6866656 ~ 6866936 (-) | True | G434338 |
| TU498395 | other | downstream | 3123997 | 6437406 ~ 6452251 (-) | True | G434086 |
| TU498319 | other | downstream | 3214605 | 6355180 ~ 6361643 (-) | True | G434016 |
| TU498286 | other | downstream | 3379038 | 6196107 ~ 6197210 (-) | True | G433985 |
| TU497952 | other | downstream | 3534965 | 6041014 ~ 6041283 (-) | True | G433670 |
| TU500988 | other | upstream | 79040 | 9656279 ~ 9671776 (-) | True | G436446 |
| TU501173 | other | upstream | 257786 | 9835025 ~ 9836323 (-) | True | G436626 |
| TU501193 | other | upstream | 444909 | 10022148 ~ 10025375 (-) | True | G436643 |
