RNA id: TU500997


Basic Information

Item Value
RNA id TU500997
length 538
lncRNA type intronic
GC content 0.37
exon number 2
gene id G436455
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9592857 ~ 9593480 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTTTTATTTAAAGAATAGGTTACATTTTTTAAGGTCAGCATGATAGCTGACAAGAAAAATTCTTAAGTAAATTTGTCTGAACTCTACAACTGAGTGACAGTGAAGTCAGACAGCTCCCGCTGCGCAACAACCCGGAATGGTACGAGCCAACATCCAACAACAGGAGCAAAAGAAAGTCTGTAGTCTGTCACCATCTCCCTGAAATTAACAAGATACACATAGGCCTACTTAAAAATATATTTAAAAAACATAAAATACAGATTTATGGAAGTTCATCTATGTTTTTTGATTACCAAGATGTCATCACTTCCTTGTCCTTTAACTTTAAAGATGGTGTTTGTGATCCTGGGATTTCCTCATATGAAATATCAGCTTCTCCTTAAAATCTGTGAAACCGGCATCTTTTGGCTGTTGCCAAACTGCAGGCCACAGAAAAACTTCATCTTTCTTATGAAGAAGAATGACAACTCGGATGTTTCCCATGGTAACGTCCATTTTATTACTCCGCAGAATCAGAGACACGCTGTTGACAGAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501000 lncRNA downstream 7225 9583606 ~ 9585632 (-) True G436458
TU501146 lncRNA downstream 15618 9576248 ~ 9577239 (-) True G436603
TU501018 lncRNA downstream 30252 9505648 ~ 9562605 (-) True G436476
TU500993 lncRNA downstream 43047 9547709 ~ 9549810 (-) True G436451
TU501011 lncRNA downstream 196118 9332973 ~ 9396739 (-) True G436469
TU500984 lncRNA upstream 453 9593933 ~ 9595287 (-) True G436442
TU500991 lncRNA upstream 7869 9601349 ~ 9623391 (-) True G436449
TU500977 lncRNA upstream 8404 9601884 ~ 9612120 (-) False G436437
TU500978 lncRNA upstream 8404 9601884 ~ 9612120 (-) True G436437
TU501148 lncRNA upstream 8914 9602394 ~ 9603376 (-) True G436605
CI01000306_09522093_09523814.mRNA mRNA downstream 67304 9522033 ~ 9525553 (-) True CI01000306_09522093_09523814
CI01000306_09381571_09461159.mRNA mRNA downstream 131284 9381187 ~ 9461573 (-) True CI01000306_09381571_09461159
CI01000306_09374084_09380300.mRNA mRNA downstream 212351 9373287 ~ 9380506 (-) True CI01000306_09374084_09380300
CI01000306_09309973_09348444.mRNA mRNA downstream 244413 9309973 ~ 9348444 (-) True CI01000306_09309973_09348444
CI01000306_09290422_09292579.mRNA mRNA downstream 300038 9290104 ~ 9292819 (-) True CI01000306_09290422_09292579
CI01000306_09628418_09641286.mRNA mRNA upstream 34341 9627821 ~ 9641286 (-) True CI01000306_09628418_09641286
CI01000306_09690177_09739046.mRNA mRNA upstream 96454 9689934 ~ 9739046 (-) True CI01000306_09690177_09739046
CI01000306_09753380_09774568.mRNA mRNA upstream 158888 9752368 ~ 9774784 (-) True CI01000306_09753380_09774568
CI01000306_09801952_09806496.mRNA mRNA upstream 208467 9801947 ~ 9808800 (-) True CI01000306_09801952_09806496
CI01000306_09825468_09827244.mRNA mRNA upstream 231095 9824575 ~ 9827282 (-) True CI01000306_09825468_09827244
TU498677 other downstream 2725921 6866656 ~ 6866936 (-) True G434338
TU498395 other downstream 3140606 6437406 ~ 6452251 (-) True G434086
TU498319 other downstream 3231214 6355180 ~ 6361643 (-) True G434016
TU498286 other downstream 3395647 6196107 ~ 6197210 (-) True G433985
TU497952 other downstream 3551574 6041014 ~ 6041283 (-) True G433670
TU500988 other upstream 62799 9656279 ~ 9671776 (-) True G436446
TU501173 other upstream 241545 9835025 ~ 9836323 (-) True G436626
TU501193 other upstream 428668 10022148 ~ 10025375 (-) True G436643

Expression Profile