RNA id: TU499959


Basic Information

Item Value
RNA id TU499959
length 234
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G435540
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9602427 ~ 9603396 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCATGATGTGGTCAGGAGTTTAAAGGAGTGTGCATTTCGAGGTCTGTTTTCTGAGCAGGTCATGATGGATCGAGCAGCTCTCAGACTGATTCTCTTGAGCGTCTTTCTCATCTCAGCCAGTTCACAACCTGTTAAGAAGAAACAAGATGTGGATATATACAGCTTCTACATTAACTCCACGGTCACCAGTCGCTACGCCACAACGGTCATCACAAGCCGTGTGGCGAACACNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU499973 lncRNA upstream 122334 9436545 ~ 9480093 (+) True G435554
TU499909 lncRNA upstream 296260 9305945 ~ 9306167 (+) True CI01000306_09296908_09305617
TU499847 lncRNA upstream 313865 9287789 ~ 9287884 (+) True G435449
TU499875 lncRNA upstream 346737 9219047 ~ 9255690 (+) True G435466
TU500011 lncRNA downstream 94033 9697429 ~ 9698325 (+) True G435589
TU500013 lncRNA downstream 101311 9704707 ~ 9717614 (+) False G435590
TU500034 lncRNA downstream 142438 9745834 ~ 9748829 (+) True G435609
TU500067 lncRNA downstream 260750 9864146 ~ 9865724 (+) True CI01000306_09860935_09865155
TU500072 lncRNA downstream 274244 9877640 ~ 9877881 (+) True G435637
CI01000306_09559074_09602026.mRNA mRNA upstream 181 9558978 ~ 9602246 (+) True CI01000306_09559074_09602026
CI01000306_09548430_09553502.mRNA mRNA upstream 48925 9548430 ~ 9553502 (+) True CI01000306_09548430_09553502
CI01000306_09536090_09548281.mRNA mRNA upstream 54146 9533915 ~ 9548281 (+) True CI01000306_09536090_09548281
CI01000306_09518431_09519858.mRNA mRNA upstream 81707 9517962 ~ 9520720 (+) True CI01000306_09518431_09519858
CI01000306_09500798_09514840.mRNA mRNA upstream 87106 9500475 ~ 9515321 (+) True CI01000306_09500798_09514840
CI01000306_09625036_09626067.mRNA mRNA downstream 21564 9624960 ~ 9626941 (+) True CI01000306_09625036_09626067
CI01000306_09656951_09671072.mRNA mRNA downstream 51999 9655395 ~ 9671766 (+) True CI01000306_09656951_09671072
CI01000306_09674684_09680504.mRNA mRNA downstream 69379 9672775 ~ 9680673 (+) True CI01000306_09674684_09680504
CI01000306_09851578_09857742.mRNA mRNA downstream 247831 9851227 ~ 9858552 (+) True CI01000306_09851578_09857742
CI01000306_09860935_09865155.mRNA mRNA downstream 257539 9860935 ~ 9865254 (+) False CI01000306_09860935_09865155
TU499849 other upstream 317098 9273899 ~ 9281923 (+) False G435449
TU499848 other upstream 324598 9273899 ~ 9277829 (+) False G435449
TU499876 other upstream 375921 9225565 ~ 9226506 (+) False CI01000306_09225597_09230504
TU498892 other upstream 2482568 7119317 ~ 7119859 (+) True G434545
TU498010 other upstream 3472649 6108611 ~ 6129778 (+) True G433724
TU500012 other downstream 109453 9712849 ~ 9737144 (+) True G435590
TU500060 other downstream 256817 9860213 ~ 9860441 (+) False G435631
TU500058 other downstream 257084 9860480 ~ 9860515 (+) False G435631
TU500059 other downstream 257084 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU500061 other downstream 257084 9860480 ~ 9860582 (+) False G435631

Expression Profile