RNA id: TU501042


Basic Information

Item Value
RNA id TU501042
length 297
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G436500
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9648484 ~ 9648780 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGGCTTGTAGTTTATTATGTACAGTATTATGTACAGTATTTTGTATGCTATTAATCTGTTATGGTGTATTTTGAAAAACACAATAAACTTTTTGTATTTTGAATTAAGTCATAAACATATTTCCAGTATGTTTTATGTTATCACACTTTCCGATGTTCAACAAAACTTGACTAACGTGCTTTTCGTTCTCTTGAAAAAGTACACACATGCGCAGTATCATCAGCTCATCGGTTCTCAAATCGGACATGTCCGAAAGAAGCGGTTCTCGGTTGTGTACTGGTGATCCGAAAACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501022 lncRNA downstream 22075 9625081 ~ 9626409 (-) True G436480
TU500991 lncRNA downstream 25093 9601349 ~ 9623391 (-) True G436449
TU500977 lncRNA downstream 36364 9601884 ~ 9612120 (-) False G436437
TU500978 lncRNA downstream 36364 9601884 ~ 9612120 (-) True G436437
TU501148 lncRNA downstream 45108 9602394 ~ 9603376 (-) True G436605
TU500987 lncRNA upstream 30729 9679509 ~ 9688407 (-) True G436445
TU501015 lncRNA upstream 123408 9772188 ~ 9785527 (-) True G436473
TU501178 lncRNA upstream 205446 9854226 ~ 9854681 (-) True G436631
TU501189 lncRNA upstream 243400 9892180 ~ 9893208 (-) True G436639
TU501219 lncRNA upstream 246262 9895042 ~ 9895283 (-) True G436664
CI01000306_09628418_09641286.mRNA mRNA downstream 7198 9627821 ~ 9641286 (-) True CI01000306_09628418_09641286
CI01000306_09522093_09523814.mRNA mRNA downstream 122931 9522033 ~ 9525553 (-) True CI01000306_09522093_09523814
CI01000306_09381571_09461159.mRNA mRNA downstream 186911 9381187 ~ 9461573 (-) True CI01000306_09381571_09461159
CI01000306_09374084_09380300.mRNA mRNA downstream 267978 9373287 ~ 9380506 (-) True CI01000306_09374084_09380300
CI01000306_09309973_09348444.mRNA mRNA downstream 300040 9309973 ~ 9348444 (-) True CI01000306_09309973_09348444
CI01000306_09690177_09739046.mRNA mRNA upstream 41154 9689934 ~ 9739046 (-) True CI01000306_09690177_09739046
CI01000306_09753380_09774568.mRNA mRNA upstream 103588 9752368 ~ 9774784 (-) True CI01000306_09753380_09774568
CI01000306_09801952_09806496.mRNA mRNA upstream 153167 9801947 ~ 9808800 (-) True CI01000306_09801952_09806496
CI01000306_09825468_09827244.mRNA mRNA upstream 175795 9824575 ~ 9827282 (-) True CI01000306_09825468_09827244
CI01000306_09879930_09884435.mRNA mRNA upstream 229914 9878694 ~ 9885270 (-) True CI01000306_09879930_09884435
TU498677 other downstream 2781548 6866656 ~ 6866936 (-) True G434338
TU498395 other downstream 3196233 6437406 ~ 6452251 (-) True G434086
TU498319 other downstream 3286841 6355180 ~ 6361643 (-) True G434016
TU498286 other downstream 3451274 6196107 ~ 6197210 (-) True G433985
TU497952 other downstream 3607201 6041014 ~ 6041283 (-) True G433670
TU500988 other upstream 7499 9656279 ~ 9671776 (-) True G436446
TU501173 other upstream 186245 9835025 ~ 9836323 (-) True G436626
TU501193 other upstream 373368 10022148 ~ 10025375 (-) True G436643

Expression Profile