RNA id: TU501221



Basic Information


Item Value
RNA id TU501221
length 236
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G436666
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9895783 ~ 9896018 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAGCAACTGACTTCCTCCCGATGAGTTTCACGCTGCATCTGGTTCTCCGGCTTTGTGTGAGACACGCAAAGCTCTTACTCGTGATTTAGATACCGCTTCCTCCACAGGTTGTCAGTGAGTCCCTATTTAGAGTACTACTCACCAACCACTGCCTCCGACTTCAAAGTGATATCTCTCCTGCTCTCTGGCAAACCCATCTGAGCACTGCTGACTTGCTGCTGTTTTCATATTTCCAG

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU501220 lncRNA downstream 41 9895518 ~ 9895742 (-) True G436665
TU501219 lncRNA downstream 500 9895042 ~ 9895283 (-) True G436664
TU501189 lncRNA downstream 2575 9892180 ~ 9893208 (-) True G436639
TU501178 lncRNA downstream 41102 9854226 ~ 9854681 (-) True G436631
TU501015 lncRNA downstream 110256 9772188 ~ 9785527 (-) True G436473
TU501222 lncRNA upstream 6 9896024 ~ 9896262 (-) True G436667
TU501224 lncRNA upstream 7178 9903196 ~ 9903649 (-) True G436669
TU501223 lncRNA upstream 7928 9903946 ~ 9904572 (-) True G436668
TU501230 lncRNA upstream 68046 9964064 ~ 9964559 (-) True G436674
TU501236 lncRNA upstream 117417 10013435 ~ 10013659 (-) True G436680
CI01000306_09887420_09890429.mRNA mRNA downstream 5354 9887140 ~ 9890429 (-) True CI01000306_09887420_09890429
CI01000306_09879930_09884435.mRNA mRNA downstream 10513 9878694 ~ 9885270 (-) True CI01000306_09879930_09884435
CI01000306_09825468_09827244.mRNA mRNA downstream 68501 9824575 ~ 9827282 (-) True CI01000306_09825468_09827244
CI01000306_09801952_09806496.mRNA mRNA downstream 86983 9801947 ~ 9808800 (-) True CI01000306_09801952_09806496
CI01000306_09753380_09774568.mRNA mRNA downstream 120999 9752368 ~ 9774784 (-) True CI01000306_09753380_09774568
CI01000306_09944940_09958459.mRNA mRNA upstream 48613 9944631 ~ 9959168 (-) True CI01000306_09944940_09958459
CI01000306_09983479_10008765.mRNA mRNA upstream 86575 9982593 ~ 10009753 (-) True CI01000306_09983479_10008765
CI01000306_10025743_10034143.mRNA mRNA upstream 129675 10025693 ~ 10034143 (-) True CI01000306_10025743_10034143
CI01000306_10262423_10269446.mRNA mRNA upstream 366405 10262423 ~ 10269446 (-) True CI01000306_10262423_10269446
CI01000306_10274565_10279388.mRNA mRNA upstream 377847 10273865 ~ 10279388 (-) True CI01000306_10274565_10279388
TU501173 other downstream 59460 9835025 ~ 9836323 (-) True G436626
TU500988 other downstream 224007 9656279 ~ 9671776 (-) True G436446
TU498677 other downstream 3028847 6866656 ~ 6866936 (-) True G434338
TU498395 other downstream 3443532 6437406 ~ 6452251 (-) True G434086
TU498319 other downstream 3534140 6355180 ~ 6361643 (-) True G434016
TU501193 other upstream 126130 10022148 ~ 10025375 (-) True G436643

Expression Profile


TU501221 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
End of interactive chart.

TU501221 Expression in each Bioproject

Bar chart with 14 bars.
TU501221 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 35.
End of interactive chart.