RNA id: TU500100


Basic Information

Item Value
RNA id TU500100
length 364
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G435661
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9897860 ~ 9898223 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCACTTGTTTTATTTATATTATTTAAAAATCTATTTTAAAAACGAAAAAATATATAAATAATATATATTTTTTTAAATGTCAGTCCTCCAACTTGCAATATATATACAGTCAAACCAAAAATTATTCAGACGTTTTTGATATTTTTGATATATTTTTACTAGTGGGTGCAGGACACTGTAGTTCATTTATGTAAGTGAGGATAGCAAAATAAAGTAAACTGTGACATATTATACCCAAAAATCCTTCATACAGTGGACTACCAGTAAAACTGATAAAAATTTGGAACCAAAAATTATTCACACACTTTGACCTGACCATGTTTGCTTGTTATCTGACATAATTAAGATCTATTTGTTCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500099 lncRNA upstream 466 9896994 ~ 9897394 (+) True G435660
TU500077 lncRNA upstream 12941 9878664 ~ 9884919 (+) False G435639
TU500072 lncRNA upstream 19979 9877640 ~ 9877881 (+) True G435637
TU500067 lncRNA upstream 32136 9864146 ~ 9865724 (+) True CI01000306_09860935_09865155
TU500034 lncRNA upstream 149031 9745834 ~ 9748829 (+) True G435609
TU500102 lncRNA downstream 5726 9903949 ~ 9904587 (+) True G435663
TU500103 lncRNA downstream 6635 9904858 ~ 9905113 (+) True G435664
TU500117 lncRNA downstream 115312 10013535 ~ 10013776 (+) True G435678
TU500120 lncRNA downstream 124105 10022328 ~ 10025387 (+) False G435681
TU500121 lncRNA downstream 124105 10022328 ~ 10023416 (+) True G435681
CI01000306_09891658_09893015.mRNA mRNA upstream 4704 9891658 ~ 9893156 (+) False CI01000306_09891658_09893015
CI01000306_09866302_09875270.mRNA mRNA upstream 22143 9866302 ~ 9875717 (+) True CI01000306_09866302_09875270
CI01000306_09860935_09865155.mRNA mRNA upstream 32606 9860935 ~ 9865254 (+) False CI01000306_09860935_09865155
CI01000306_09851578_09857742.mRNA mRNA upstream 39308 9851227 ~ 9858552 (+) True CI01000306_09851578_09857742
CI01000306_09674684_09680504.mRNA mRNA upstream 217187 9672775 ~ 9680673 (+) True CI01000306_09674684_09680504
CI01000306_09922070_09935786.mRNA mRNA downstream 23847 9922070 ~ 9936407 (+) True CI01000306_09922070_09935786
CI01000306_09971328_09977478.mRNA mRNA downstream 73105 9971328 ~ 9977752 (+) True CI01000306_09971328_09977478
CI01000306_10078014_10104625.mRNA mRNA downstream 179333 10077556 ~ 10105147 (+) True CI01000306_10078014_10104625
CI01000306_10109047_10115899.mRNA mRNA downstream 209412 10107635 ~ 10116072 (+) True CI01000306_10109047_10115899
CI01000306_10190981_10191175.mRNA mRNA downstream 292758 10190981 ~ 10191195 (+) True CI01000306_10190981_10191175
TU500080 other upstream 4621 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 12941 9879920 ~ 9884919 (+) True G435639
TU500059 other upstream 34671 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU501503 other downstream 1184765 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 1184765 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 1371535 11269758 ~ 11271160 (+) True G437030

Expression Profile