Item | Value |
---|---|
RNA id | TU501224 |
length | 454 |
lncRNA type | inter_gene |
GC content | 0.40 |
exon number | 1 |
gene id | G436669 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000306 |
NCBI id | null |
chromosome length | 11491657 |
location | 9903196 ~ 9903649 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU501222 | lncRNA | downstream | 6934 | 9896024 ~ 9896262 (-) | True | G436667 |
TU501221 | lncRNA | downstream | 7178 | 9895783 ~ 9896018 (-) | True | G436666 |
TU501220 | lncRNA | downstream | 7454 | 9895518 ~ 9895742 (-) | True | G436665 |
TU501219 | lncRNA | downstream | 7913 | 9895042 ~ 9895283 (-) | True | G436664 |
TU501189 | lncRNA | downstream | 9988 | 9892180 ~ 9893208 (-) | True | G436639 |
TU501223 | lncRNA | upstream | 297 | 9903946 ~ 9904572 (-) | True | G436668 |
TU501230 | lncRNA | upstream | 60415 | 9964064 ~ 9964559 (-) | True | G436674 |
TU501236 | lncRNA | upstream | 109786 | 10013435 ~ 10013659 (-) | True | G436680 |
TU501192 | lncRNA | upstream | 174334 | 10077983 ~ 10109617 (-) | True | G436642 |
TU501272 | lncRNA | upstream | 231387 | 10135036 ~ 10135369 (-) | True | G436716 |
CI01000306_09887420_09890429.mRNA | mRNA | downstream | 12767 | 9887140 ~ 9890429 (-) | True | CI01000306_09887420_09890429 |
CI01000306_09879930_09884435.mRNA | mRNA | downstream | 17926 | 9878694 ~ 9885270 (-) | True | CI01000306_09879930_09884435 |
CI01000306_09825468_09827244.mRNA | mRNA | downstream | 75914 | 9824575 ~ 9827282 (-) | True | CI01000306_09825468_09827244 |
CI01000306_09801952_09806496.mRNA | mRNA | downstream | 94396 | 9801947 ~ 9808800 (-) | True | CI01000306_09801952_09806496 |
CI01000306_09753380_09774568.mRNA | mRNA | downstream | 128412 | 9752368 ~ 9774784 (-) | True | CI01000306_09753380_09774568 |
CI01000306_09944940_09958459.mRNA | mRNA | upstream | 40982 | 9944631 ~ 9959168 (-) | True | CI01000306_09944940_09958459 |
CI01000306_09983479_10008765.mRNA | mRNA | upstream | 78944 | 9982593 ~ 10009753 (-) | True | CI01000306_09983479_10008765 |
CI01000306_10025743_10034143.mRNA | mRNA | upstream | 122044 | 10025693 ~ 10034143 (-) | True | CI01000306_10025743_10034143 |
CI01000306_10262423_10269446.mRNA | mRNA | upstream | 358774 | 10262423 ~ 10269446 (-) | True | CI01000306_10262423_10269446 |
CI01000306_10274565_10279388.mRNA | mRNA | upstream | 370216 | 10273865 ~ 10279388 (-) | True | CI01000306_10274565_10279388 |
TU501173 | other | downstream | 66873 | 9835025 ~ 9836323 (-) | True | G436626 |
TU500988 | other | downstream | 231420 | 9656279 ~ 9671776 (-) | True | G436446 |
TU498677 | other | downstream | 3036260 | 6866656 ~ 6866936 (-) | True | G434338 |
TU498395 | other | downstream | 3450945 | 6437406 ~ 6452251 (-) | True | G434086 |
TU498319 | other | downstream | 3541553 | 6355180 ~ 6361643 (-) | True | G434016 |
TU501193 | other | upstream | 118499 | 10022148 ~ 10025375 (-) | True | G436643 |