RNA id: TU500102


Basic Information

Item Value
RNA id TU500102
length 639
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G435663
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9903949 ~ 9904587 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAATAGGCGAGTTGGGGGGTAAAACAGCACAGCAAAGCACAAGCAAACAGGAAGGCAGAAAACAGGCATATCCGCTCCCAAAGTTCTTTTTATAATGTGAGACATTTTTGCAACCACAATGTGAGATTATTCTTATTAGTCACAATGATTGCCTAATTGGCATAGTGTGTAGCGCGGAGAATACAGAGTGATTCTTGCAGGCCTGACAGGCAGGCTGTGTTATAATGAAGACAAGGGGTCTAAAGAACGTTTGGTTGTGTTCCAAAAGACTGAATTAACGTCTTCATTCTATGGAGTCATTTGCATTTGTAAATGCCACGGTTCTGCAGAAATGCTTGCAAGATGTAGAGTGTTTGGGTTCACCAGTCTTTTGATGCACAAAAGGCCTGTCCTGACATTGGGAGCTCATAGGGTACGTTCCAACAACGGCCAGAAACATACTCTGTGCAAGCACACAAGTAAACCATTCATAGGTTGATTCCTTCAAAAAGCATAAATGCTGAAACATTGCTGTGTTTGTTTGAGCATCCCAGTCTGTATGGGAAACTTCACTTTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATCAATTACATGTCATTCCAAACCCGTAAGACTTTCGTTCATCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500100 lncRNA upstream 5726 9897860 ~ 9898223 (+) True G435661
TU500099 lncRNA upstream 6555 9896994 ~ 9897394 (+) True G435660
TU500077 lncRNA upstream 19030 9878664 ~ 9884919 (+) False G435639
TU500072 lncRNA upstream 26068 9877640 ~ 9877881 (+) True G435637
TU500067 lncRNA upstream 38225 9864146 ~ 9865724 (+) True CI01000306_09860935_09865155
TU500103 lncRNA downstream 271 9904858 ~ 9905113 (+) True G435664
TU500117 lncRNA downstream 108948 10013535 ~ 10013776 (+) True G435678
TU500120 lncRNA downstream 117741 10022328 ~ 10025387 (+) False G435681
TU500121 lncRNA downstream 117741 10022328 ~ 10023416 (+) True G435681
TU500142 lncRNA downstream 148290 10052877 ~ 10053204 (+) True G435701
CI01000306_09891658_09893015.mRNA mRNA upstream 10793 9891658 ~ 9893156 (+) False CI01000306_09891658_09893015
CI01000306_09866302_09875270.mRNA mRNA upstream 28232 9866302 ~ 9875717 (+) True CI01000306_09866302_09875270
CI01000306_09860935_09865155.mRNA mRNA upstream 38695 9860935 ~ 9865254 (+) False CI01000306_09860935_09865155
CI01000306_09851578_09857742.mRNA mRNA upstream 45397 9851227 ~ 9858552 (+) True CI01000306_09851578_09857742
CI01000306_09674684_09680504.mRNA mRNA upstream 223276 9672775 ~ 9680673 (+) True CI01000306_09674684_09680504
CI01000306_09922070_09935786.mRNA mRNA downstream 17483 9922070 ~ 9936407 (+) True CI01000306_09922070_09935786
CI01000306_09971328_09977478.mRNA mRNA downstream 66741 9971328 ~ 9977752 (+) True CI01000306_09971328_09977478
CI01000306_10078014_10104625.mRNA mRNA downstream 172969 10077556 ~ 10105147 (+) True CI01000306_10078014_10104625
CI01000306_10109047_10115899.mRNA mRNA downstream 203048 10107635 ~ 10116072 (+) True CI01000306_10109047_10115899
CI01000306_10190981_10191175.mRNA mRNA downstream 286394 10190981 ~ 10191195 (+) True CI01000306_10190981_10191175
TU500080 other upstream 10710 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 19030 9879920 ~ 9884919 (+) True G435639
TU500059 other upstream 40760 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU501503 other downstream 1178401 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 1178401 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 1365171 11269758 ~ 11271160 (+) True G437030

Expression Profile