RNA id: TU500117


Basic Information

Item Value
RNA id TU500117
length 242
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G435678
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 10013535 ~ 10013776 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATGTATCCAAACAGTTGCTCACCTGTCTAATAAAAACATATAACATATTAAAGCATCTTTGGTGTTTCCATGGTTTCTACAAAATAAAACTGGAAACCAAGGGTAGCGCAGGTATGATGTCATTGATAGGCGACACATGAACACGGTCCGTGTCCTAGTTAAAATAGCTTATTTCTCTGGATTTAAACATTCTTGGAAGCATTTGGGATATTGTAAGTATACAAGTCAACTATATATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500103 lncRNA upstream 108422 9904858 ~ 9905113 (+) True G435664
TU500102 lncRNA upstream 108948 9903949 ~ 9904587 (+) True G435663
TU500100 lncRNA upstream 115312 9897860 ~ 9898223 (+) True G435661
TU500099 lncRNA upstream 116141 9896994 ~ 9897394 (+) True G435660
TU500077 lncRNA upstream 128616 9878664 ~ 9884919 (+) False G435639
TU500120 lncRNA downstream 8552 10022328 ~ 10025387 (+) False G435681
TU500121 lncRNA downstream 8552 10022328 ~ 10023416 (+) True G435681
TU500142 lncRNA downstream 39101 10052877 ~ 10053204 (+) True G435701
TU500143 lncRNA downstream 39938 10053714 ~ 10130880 (+) True G435702
TU500192 lncRNA downstream 109188 10122964 ~ 10125251 (+) True G435746
CI01000306_09971328_09977478.mRNA mRNA upstream 35783 9971328 ~ 9977752 (+) True CI01000306_09971328_09977478
CI01000306_09922070_09935786.mRNA mRNA upstream 77128 9922070 ~ 9936407 (+) True CI01000306_09922070_09935786
CI01000306_09891658_09893015.mRNA mRNA upstream 120379 9891658 ~ 9893156 (+) False CI01000306_09891658_09893015
CI01000306_09866302_09875270.mRNA mRNA upstream 137818 9866302 ~ 9875717 (+) True CI01000306_09866302_09875270
CI01000306_09860935_09865155.mRNA mRNA upstream 148281 9860935 ~ 9865254 (+) False CI01000306_09860935_09865155
CI01000306_10078014_10104625.mRNA mRNA downstream 63780 10077556 ~ 10105147 (+) True CI01000306_10078014_10104625
CI01000306_10109047_10115899.mRNA mRNA downstream 93859 10107635 ~ 10116072 (+) True CI01000306_10109047_10115899
CI01000306_10190981_10191175.mRNA mRNA downstream 177205 10190981 ~ 10191195 (+) True CI01000306_10190981_10191175
CI01000306_10194611_10226157.mRNA mRNA downstream 180462 10194238 ~ 10226166 (+) True CI01000306_10194611_10226157
CI01000306_10241081_10252745.mRNA mRNA downstream 227305 10241081 ~ 10252864 (+) True CI01000306_10241081_10252745
TU500080 other upstream 120296 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 128616 9879920 ~ 9884919 (+) True G435639
TU500059 other upstream 150346 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU501503 other downstream 1069212 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 1069212 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 1255982 11269758 ~ 11271160 (+) True G437030

Expression Profile