RNA id: TU500143


Basic Information

Item Value
RNA id TU500143
length 202
lncRNA type read_through
GC content 0.36
exon number 2
gene id G435702
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 10053714 ~ 10130880 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACTGAAGAATCTGCAGGACCTGGAGATTTTTTCTGAAGAACAGAGCTCAGTTTAACTGCTCAGGACAAACAAGAGACTCATGAACAACCATCACAAAACAAAAAAAACAGTCATAGATCATCCAGGTAACCACACACAGTGTTAAGAATTAGTGGTTCACATACTTATGAATGGGGTTATTTTAATAAATTCAGCTATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500142 lncRNA upstream 510 10052877 ~ 10053204 (+) True G435701
TU500120 lncRNA upstream 28327 10022328 ~ 10025387 (+) False G435681
TU500121 lncRNA upstream 30298 10022328 ~ 10023416 (+) True G435681
TU500117 lncRNA upstream 39938 10013535 ~ 10013776 (+) True G435678
TU500103 lncRNA upstream 148601 9904858 ~ 9905113 (+) True G435664
TU500197 lncRNA downstream 4103 10134983 ~ 10135303 (+) True G435750
TU500200 lncRNA downstream 8039 10138919 ~ 10139178 (+) True G435753
TU500213 lncRNA downstream 126041 10256921 ~ 10261092 (+) True G435764
TU500216 lncRNA downstream 152758 10283638 ~ 10286492 (+) True G435767
TU500342 lncRNA downstream 381870 10512750 ~ 10527209 (+) True G435878
CI01000306_09971328_09977478.mRNA mRNA upstream 75962 9971328 ~ 9977752 (+) True CI01000306_09971328_09977478
CI01000306_09922070_09935786.mRNA mRNA upstream 117307 9922070 ~ 9936407 (+) True CI01000306_09922070_09935786
CI01000306_09891658_09893015.mRNA mRNA upstream 160558 9891658 ~ 9893156 (+) False CI01000306_09891658_09893015
CI01000306_09866302_09875270.mRNA mRNA upstream 177997 9866302 ~ 9875717 (+) True CI01000306_09866302_09875270
CI01000306_09860935_09865155.mRNA mRNA upstream 188460 9860935 ~ 9865254 (+) False CI01000306_09860935_09865155
CI01000306_10190981_10191175.mRNA mRNA downstream 60101 10190981 ~ 10191195 (+) True CI01000306_10190981_10191175
CI01000306_10194611_10226157.mRNA mRNA downstream 63358 10194238 ~ 10226166 (+) True CI01000306_10194611_10226157
CI01000306_10241081_10252745.mRNA mRNA downstream 110201 10241081 ~ 10252864 (+) True CI01000306_10241081_10252745
CI01000306_10304503_10316470.mRNA mRNA downstream 173365 10304245 ~ 10316678 (+) True CI01000306_10304503_10316470
CI01000306_10332743_10335743.mRNA mRNA downstream 201781 10332661 ~ 10335849 (+) True CI01000306_10332743_10335743
TU500080 other upstream 160475 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 168795 9879920 ~ 9884919 (+) True G435639
TU500059 other upstream 190525 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU501503 other downstream 952108 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 952108 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 1138878 11269758 ~ 11271160 (+) True G437030

Expression Profile