RNA id: TU500200


Basic Information

Item Value
RNA id TU500200
length 260
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G435753
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 10138919 ~ 10139178 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTAGTAAATACCATTAATAATTTATGTAATTATAGTATTTTGACAAAACTGTGTAAAACAGGTGAAAGTGATTTCACCAAGTACAACATGCTCCTGGATCAACATTCCAATCAACCAATCAGATTTGAGGGGCAAGTTTACAGTTTATGTCAAGTTTAGGCTAACAACCAGGGTTAGGTGCTTCTACATCAGTGTTATTCACCTACCATTCCCTCTGATTTTAGGAATAACTTATGGGTTGGGTTAGGTTTAGGGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500197 lncRNA upstream 3616 10134983 ~ 10135303 (+) True G435750
TU500143 lncRNA upstream 8039 10053714 ~ 10130880 (+) True G435702
TU500192 lncRNA upstream 13668 10122964 ~ 10125251 (+) True G435746
TU500142 lncRNA upstream 85715 10052877 ~ 10053204 (+) True G435701
TU500120 lncRNA upstream 113532 10022328 ~ 10025387 (+) False G435681
TU500213 lncRNA downstream 117743 10256921 ~ 10261092 (+) True G435764
TU500216 lncRNA downstream 144460 10283638 ~ 10286492 (+) True G435767
TU500342 lncRNA downstream 373572 10512750 ~ 10527209 (+) True G435878
TU500353 lncRNA downstream 467686 10606864 ~ 10607159 (+) True G435889
TU501483 lncRNA downstream 538187 10677365 ~ 10677606 (+) True G436913
CI01000306_10109047_10115899.mRNA mRNA upstream 22847 10107635 ~ 10116072 (+) True CI01000306_10109047_10115899
CI01000306_10078014_10104625.mRNA mRNA upstream 33772 10077556 ~ 10105147 (+) True CI01000306_10078014_10104625
CI01000306_09971328_09977478.mRNA mRNA upstream 161167 9971328 ~ 9977752 (+) True CI01000306_09971328_09977478
CI01000306_09922070_09935786.mRNA mRNA upstream 202512 9922070 ~ 9936407 (+) True CI01000306_09922070_09935786
CI01000306_09891658_09893015.mRNA mRNA upstream 245763 9891658 ~ 9893156 (+) False CI01000306_09891658_09893015
CI01000306_10190981_10191175.mRNA mRNA downstream 51803 10190981 ~ 10191195 (+) True CI01000306_10190981_10191175
CI01000306_10194611_10226157.mRNA mRNA downstream 55060 10194238 ~ 10226166 (+) True CI01000306_10194611_10226157
CI01000306_10241081_10252745.mRNA mRNA downstream 101903 10241081 ~ 10252864 (+) True CI01000306_10241081_10252745
CI01000306_10304503_10316470.mRNA mRNA downstream 165067 10304245 ~ 10316678 (+) True CI01000306_10304503_10316470
CI01000306_10332743_10335743.mRNA mRNA downstream 193483 10332661 ~ 10335849 (+) True CI01000306_10332743_10335743
TU500080 other upstream 245680 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 254000 9879920 ~ 9884919 (+) True G435639
TU500059 other upstream 275730 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU501503 other downstream 943810 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 943810 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 1130580 11269758 ~ 11271160 (+) True G437030

Expression Profile