Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU500216 |
| length | 2487 |
| lncRNA type | antisense_over |
| GC content | 0.35 |
| exon number | 2 |
| gene id | G435767 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 10283638 ~ 10286492 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU500213 | lncRNA | upstream | 22546 | 10256921 ~ 10261092 (+) | True | G435764 |
| TU500200 | lncRNA | upstream | 144460 | 10138919 ~ 10139178 (+) | True | G435753 |
| TU500197 | lncRNA | upstream | 148335 | 10134983 ~ 10135303 (+) | True | G435750 |
| TU500143 | lncRNA | upstream | 152758 | 10053714 ~ 10130880 (+) | True | G435702 |
| TU500192 | lncRNA | upstream | 158387 | 10122964 ~ 10125251 (+) | True | G435746 |
| TU500342 | lncRNA | downstream | 226258 | 10512750 ~ 10527209 (+) | True | G435878 |
| TU500353 | lncRNA | downstream | 320372 | 10606864 ~ 10607159 (+) | True | G435889 |
| TU501483 | lncRNA | downstream | 390873 | 10677365 ~ 10677606 (+) | True | G436913 |
| TU501550 | lncRNA | downstream | 443636 | 10730128 ~ 10730492 (+) | True | G436973 |
| TU501556 | lncRNA | downstream | 450834 | 10737326 ~ 10737522 (+) | True | G436975 |
| CI01000306_10241081_10252745.mRNA | mRNA | upstream | 30774 | 10241081 ~ 10252864 (+) | True | CI01000306_10241081_10252745 |
| CI01000306_10194611_10226157.mRNA | mRNA | upstream | 57472 | 10194238 ~ 10226166 (+) | True | CI01000306_10194611_10226157 |
| CI01000306_10190981_10191175.mRNA | mRNA | upstream | 92443 | 10190981 ~ 10191195 (+) | True | CI01000306_10190981_10191175 |
| CI01000306_10109047_10115899.mRNA | mRNA | upstream | 167566 | 10107635 ~ 10116072 (+) | True | CI01000306_10109047_10115899 |
| CI01000306_10078014_10104625.mRNA | mRNA | upstream | 178491 | 10077556 ~ 10105147 (+) | True | CI01000306_10078014_10104625 |
| CI01000306_10304503_10316470.mRNA | mRNA | downstream | 17753 | 10304245 ~ 10316678 (+) | True | CI01000306_10304503_10316470 |
| CI01000306_10332743_10335743.mRNA | mRNA | downstream | 46169 | 10332661 ~ 10335849 (+) | True | CI01000306_10332743_10335743 |
| CI01000306_10347562_10355420.mRNA | mRNA | downstream | 59859 | 10346351 ~ 10355457 (+) | True | CI01000306_10347562_10355420 |
| CI01000306_10429251_10466444.mRNA | mRNA | downstream | 142759 | 10429251 ~ 10466851 (+) | True | CI01000306_10429251_10466444 |
| CI01000306_10548464_10549530.mRNA | mRNA | downstream | 261972 | 10548464 ~ 10549627 (+) | True | CI01000306_10548464_10549530 |
| TU500080 | other | upstream | 390399 | 9891990 ~ 9892016 (+) | True | G435641 |
| TU500075 | other | upstream | 398719 | 9879920 ~ 9884919 (+) | True | G435639 |
| TU500059 | other | upstream | 420449 | 9860480 ~ 9863189 (+) | False | CI01000306_09860935_09865155 |
| TU501503 | other | downstream | 796496 | 11082988 ~ 11098033 (+) | False | G436932 |
| TU501504 | other | downstream | 796496 | 11082988 ~ 11098376 (+) | True | G436932 |
| TU501617 | other | downstream | 983266 | 11269758 ~ 11271160 (+) | True | G437030 |
