RNA id: TU501561


Basic Information

Item Value
RNA id TU501561
length 236
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G436978
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 10763648 ~ 10763995 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGTATATAAGGCATAATAATAAGCTTCTGGACAGCTAAGTAGATGGCCAGCGGGCCCACAGTGGCATAAAACACAGCGCTGGGTAAAATCTGGTCGGTCAGATGAATCGGGAAGAGGTAGGTCTGACTGGCTCTGTTCAACCTGATTTTGAGGGAGACTCCTTGGGGTACACCAATGCTGACGGTAGCAGCCAAAACACTGTGGCGACTGATCTTACGCTCTGCACCATATTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501558 lncRNA upstream 18824 10741924 ~ 10744824 (+) True G436976
TU501553 lncRNA upstream 22601 10737449 ~ 10737522 (+) False G436975
TU501554 lncRNA upstream 23572 10737449 ~ 10737522 (+) False G436975
TU501556 lncRNA upstream 23779 10737326 ~ 10737522 (+) True G436975
TU501552 lncRNA upstream 23779 10737449 ~ 10737522 (+) False G436975
TU501522 lncRNA downstream 11065 10775060 ~ 10802813 (+) True G436949
TU501523 lncRNA downstream 43069 10807064 ~ 10826963 (+) True CI01000306_10775550_10815981
TU501531 lncRNA downstream 117112 10881107 ~ 10901365 (+) True G436958
TU501534 lncRNA downstream 207978 10978441 ~ 10990359 (+) True G436961
TU501533 lncRNA downstream 226500 10990495 ~ 10998454 (+) True G436960
CI01000306_10751001_10756733.mRNA mRNA upstream 6873 10750610 ~ 10756775 (+) True CI01000306_10751001_10756733
CI01000306_10738169_10739341.mRNA mRNA upstream 23759 10738169 ~ 10739889 (+) False CI01000306_10738169_10739341
CI01000306_10564069_10568262.mRNA mRNA upstream 195091 10562840 ~ 10568557 (+) True CI01000306_10564069_10568262
CI01000306_10548464_10549530.mRNA mRNA upstream 214021 10548464 ~ 10549627 (+) True CI01000306_10548464_10549530
CI01000306_10429251_10466444.mRNA mRNA upstream 296797 10429251 ~ 10466851 (+) True CI01000306_10429251_10466444
CI01000306_10775550_10815981.mRNA mRNA downstream 11351 10775346 ~ 10816076 (+) False CI01000306_10775550_10815981
CI01000306_10975455_10976511.mRNA mRNA downstream 211332 10975327 ~ 10977095 (+) False CI01000306_10975455_10976511
CI01000306_11052174_11076357.mRNA mRNA downstream 288179 11052174 ~ 11076496 (+) True CI01000306_11052174_11076357
CI01000306_11107383_11122980.mRNA mRNA downstream 343304 11107299 ~ 11123375 (+) True CI01000306_11107383_11122980
CI01000306_11139228_11152171.mRNA mRNA downstream 375233 11139228 ~ 11152218 (+) True CI01000306_11139228_11152171
TU500080 other upstream 870409 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 878729 9879920 ~ 9884919 (+) True G435639
TU500059 other upstream 900459 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU501503 other downstream 318993 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 318993 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 505763 11269758 ~ 11271160 (+) True G437030

Expression Profile