RNA id: TU501566


Basic Information

Item Value
RNA id TU501566
length 275
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G436983
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 11011724 ~ 11011998 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTGAATATACTTAAATAGTTATTTGCCATTTCAATATTTATTGATTATATTAGTCATTATTTATTATGCATTATTTTTATTATTATTTATATTATTTATTGAATTAAAGAATAAAATGGCATCCTTTTATATGTGTGCGAAAGAAAGATTAATGACAAGATTCTCACTTGTTTCTCCGAGACAGAAGTGAGATTACATGGAGAGCAAATGGATCCTTTTGCTTGAGTCTCTTACTTCTCATATATTTATTTCTTAGTTTCAGAATAGATCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501533 lncRNA upstream 13270 10990495 ~ 10998454 (+) True G436960
TU501534 lncRNA upstream 21365 10978441 ~ 10990359 (+) True G436961
TU501531 lncRNA upstream 110359 10881107 ~ 10901365 (+) True G436958
TU501523 lncRNA upstream 184761 10807064 ~ 10826963 (+) True CI01000306_10775550_10815981
TU501522 lncRNA upstream 208911 10775060 ~ 10802813 (+) True G436949
TU501568 lncRNA downstream 14128 11026126 ~ 11026492 (+) True G436985
TU501569 lncRNA downstream 15058 11027056 ~ 11027361 (+) True G436986
TU501570 lncRNA downstream 16300 11028298 ~ 11028780 (+) True G436987
TU501506 lncRNA downstream 112586 11124584 ~ 11125281 (+) True G436933
TU501525 lncRNA downstream 115557 11127555 ~ 11129064 (+) True G436952
CI01000306_10975455_10976511.mRNA mRNA upstream 34629 10975327 ~ 10977095 (+) False CI01000306_10975455_10976511
CI01000306_10775550_10815981.mRNA mRNA upstream 195648 10775346 ~ 10816076 (+) False CI01000306_10775550_10815981
CI01000306_10751001_10756733.mRNA mRNA upstream 254949 10750610 ~ 10756775 (+) True CI01000306_10751001_10756733
CI01000306_10738169_10739341.mRNA mRNA upstream 271835 10738169 ~ 10739889 (+) False CI01000306_10738169_10739341
CI01000306_10564069_10568262.mRNA mRNA upstream 443167 10562840 ~ 10568557 (+) True CI01000306_10564069_10568262
CI01000306_11052174_11076357.mRNA mRNA downstream 40176 11052174 ~ 11076496 (+) True CI01000306_11052174_11076357
CI01000306_11107383_11122980.mRNA mRNA downstream 95301 11107299 ~ 11123375 (+) True CI01000306_11107383_11122980
CI01000306_11139228_11152171.mRNA mRNA downstream 127230 11139228 ~ 11152218 (+) True CI01000306_11139228_11152171
CI01000306_11181222_11192574.mRNA mRNA downstream 169224 11181222 ~ 11192640 (+) True CI01000306_11181222_11192574
CI01000306_11202677_11210993.mRNA mRNA downstream 189611 11201609 ~ 11211208 (+) False CI01000306_11202677_11210993
TU500080 other upstream 1118485 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 1126805 9879920 ~ 9884919 (+) True G435639
TU500059 other upstream 1148535 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU501503 other downstream 70990 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 70990 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 257760 11269758 ~ 11271160 (+) True G437030

Expression Profile