RNA id: TU501503



Basic Information


Item Value
RNA id TU501503
length 1361
RNA type TUCP
GC content 0.41
exon number 5
gene id G436932
representative False

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 11082988 ~ 11098376 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CACACACTCACGCGCTCACAGTAGTATCAGCGGGGCCTTCACACATCAAACATCAACTCAACAAACATGTCCGCCCCGGGTGCAGATGGCTCTGGTTCTGCAGGGAGTAACCGCAGGCTGCAGCAGACGCAGGCACAGGTGGATGAGGTGGTGGACATCATGAGGGTGAATGTCGATAAGGTCCTGGAACGAGACCAAAAGCTTTCTGACCTGGACGATCGTGCCGATGCCCTGCAGGCCGGTGCTTCCCAGTTTGAGACCAGCGCCGCCAAGCTCAAGAGGAAGTACTGGTGGAAGAACTGCAAGATGTGGGCCATTTTGATAGCCGTGCTTGTGATCATCATTATCATCATTGTTATCTGGACACAGTCATCATAATGACGCAATACAGAGAAGAAAACTGGTTATGATTGGAGGAGAAGATTAGGATATGAAGGAGTATCAACTTCAGAAAGAAGAAAGAGAGGGGGAATGAATGAATGAATGCTCTTCCAATGAGTTCTAACCTGCTGATTTTCAAAAGCATATCTTGTAAACTATCCTCAATGTTTTTTGGGTTTTTTTTTTTCTTCTTCTTTTAGGTTTTGTTTTTAATGACTAGGATTTGAATAAGTTCCAAAATGCCTAACGATTTCCAAATATATCTAACACACTCCTCTGTGCAAACCGCAGAATGATGACTGACTCTAGGTGGTGTACAAGTTACAATATGATCCAAAACCACAAAAGTCCTACTTTCATTTGGAGGCCAAAACGTGTTGACCAAAAACCAGGCAAAACTCTTGTTGTGAAAGCCATTTGCCAACATCTGATCTCATTGATGAATCCCTCATGGACTATTTTAGTGGACGGCCGTAATCAGACACTTAGTTTTGGCCGTGTCAGAGTCTTTCTGTGCCAACAAGACATAAGAGCCTTTCCTGAACAACCACAGACGTGCCATCAGTGCCTGTAGACAAACTCCACTGCTATCCTGTAACAACAGAACTTCACTCTGATTTTACTCAGAATATCTGCACAAAAATGCTATATATAAGTTTGAGATATTATTGAATGATTAAAGTGATTATTCACTAATAATTTAACTGCATTTGTATTGCCTTATGTAGAAGTAGTTTGCTTGGAAATATCTTTGCTTAATCACATTTCAGTAGTATTGATTTTTGGTGTTTTCTTCACCTCTTGCTCATGGTGCCAAAACATTTTATGTTTGTTAATCTGAGCTTTTTTTTTGTATGTATCTCTTTGTATGTCTCACGTGTGTATAAATTGTAAACAAGTGCAATTCTATACTGTGGCCTTACAAACTTAAGTGTATTGAATTGCCCACGTTGGCTCAATAAAACACAGATTTAACATCC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU501570 lncRNA upstream 54208 11028298 ~ 11028780 (+) True G436987
TU501569 lncRNA upstream 55627 11027056 ~ 11027361 (+) True G436986
TU501568 lncRNA upstream 56496 11026126 ~ 11026492 (+) True G436985
TU501566 lncRNA upstream 70990 11011724 ~ 11011998 (+) True G436983
TU501533 lncRNA upstream 84534 10990495 ~ 10998454 (+) True G436960
TU501506 lncRNA downstream 26551 11124584 ~ 11125281 (+) True G436933
TU501525 lncRNA downstream 29522 11127555 ~ 11129064 (+) True G436952
TU501580 lncRNA downstream 65279 11163312 ~ 11164100 (+) True G436994
TU501582 lncRNA downstream 68756 11166789 ~ 11167002 (+) True G436996
TU501581 lncRNA downstream 70882 11168915 ~ 11171300 (+) True G436995
CI01000306_11052174_11076357.mRNA mRNA upstream 6492 11052174 ~ 11076496 (+) True CI01000306_11052174_11076357
CI01000306_10975455_10976511.mRNA mRNA upstream 105893 10975327 ~ 10977095 (+) False CI01000306_10975455_10976511
CI01000306_10775550_10815981.mRNA mRNA upstream 266912 10775346 ~ 10816076 (+) False CI01000306_10775550_10815981
CI01000306_10751001_10756733.mRNA mRNA upstream 326213 10750610 ~ 10756775 (+) True CI01000306_10751001_10756733
CI01000306_10738169_10739341.mRNA mRNA upstream 343099 10738169 ~ 10739889 (+) False CI01000306_10738169_10739341
CI01000306_11107383_11122980.mRNA mRNA downstream 9266 11107299 ~ 11123375 (+) True CI01000306_11107383_11122980
CI01000306_11139228_11152171.mRNA mRNA downstream 41195 11139228 ~ 11152218 (+) True CI01000306_11139228_11152171
CI01000306_11181222_11192574.mRNA mRNA downstream 83189 11181222 ~ 11192640 (+) True CI01000306_11181222_11192574
CI01000306_11202677_11210993.mRNA mRNA downstream 103576 11201609 ~ 11211208 (+) False CI01000306_11202677_11210993
CI01000306_11247260_11249148.mRNA mRNA downstream 148640 11246673 ~ 11249173 (+) True CI01000306_11247260_11249148
TU500080 other upstream 1189749 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 1198069 9879920 ~ 9884919 (+) True G435639
TU500058 other upstream 1219799 9860480 ~ 9860515 (+) False G435631
TU501617 other downstream 171725 11269758 ~ 11271160 (+) True G437030

Expression Profile


TU501503 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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TU501503 Expression in each Bioproject

Bar chart with 44 bars.
TU501503 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.