RNA id: TU501579


Basic Information

Item Value
RNA id TU501579
length 472
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G436993
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 11176393 ~ 11176864 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAACATATAATAATACAAAGACACATATTCAATACTAGGGAAAAGGATGGTTTTGAGGTTTCCAGTTCTGACATTTTCACTTTGGGAGACCAACTAAACTTTTTCTGTTTTACACTCCAGTTTTCTTAAAGCATGATTTTAAAAAGCATTTGGTATTGAAATCCCACTATCAGCATCAAACTTAAAGCAGCAGTTTCCCCACTGTGGGAAATTCAGCATTTTTTTTATGCAACTACCCAAAAGCTGCAAAGCAGGTGTTGGGAGTTTGATCCTACGAACTAGTAGGATAATAATAAATTACAAATAGCAATAACCCATATATCATAAATTGGCTCACCTAAGAAGAGCCATAAGCATATATAATCTCATAGAAGACTACACTACTAAAGTACATGTGTGGTGTTAAAGGGATAGTTCACCCAAAAATGAAAATTATCCCATGATTTACTCACCATCAAGCCATCCTGGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501581 lncRNA upstream 5093 11168915 ~ 11171300 (+) True G436995
TU501582 lncRNA upstream 9391 11166789 ~ 11167002 (+) True G436996
TU501580 lncRNA upstream 12293 11163312 ~ 11164100 (+) True G436994
TU501525 lncRNA upstream 47329 11127555 ~ 11129064 (+) True G436952
TU501506 lncRNA upstream 51112 11124584 ~ 11125281 (+) True G436933
TU501583 lncRNA downstream 2599 11179463 ~ 11179862 (+) True G436997
TU501514 lncRNA downstream 16781 11193645 ~ 11196482 (+) True G436941
TU501530 lncRNA downstream 20389 11197253 ~ 11197635 (+) True G436957
TU501517 lncRNA downstream 21132 11197996 ~ 11198328 (+) True G436944
TU501516 lncRNA downstream 23326 11200190 ~ 11200431 (+) True G436943
CI01000306_11139228_11152171.mRNA mRNA upstream 24175 11139228 ~ 11152218 (+) True CI01000306_11139228_11152171
CI01000306_11107383_11122980.mRNA mRNA upstream 53018 11107299 ~ 11123375 (+) True CI01000306_11107383_11122980
CI01000306_11052174_11076357.mRNA mRNA upstream 99897 11052174 ~ 11076496 (+) True CI01000306_11052174_11076357
CI01000306_10975455_10976511.mRNA mRNA upstream 199298 10975327 ~ 10977095 (+) False CI01000306_10975455_10976511
CI01000306_10775550_10815981.mRNA mRNA upstream 360317 10775346 ~ 10816076 (+) False CI01000306_10775550_10815981
CI01000306_11181222_11192574.mRNA mRNA downstream 4358 11181222 ~ 11192640 (+) True CI01000306_11181222_11192574
CI01000306_11202677_11210993.mRNA mRNA downstream 24745 11201609 ~ 11211208 (+) False CI01000306_11202677_11210993
CI01000306_11247260_11249148.mRNA mRNA downstream 69809 11246673 ~ 11249173 (+) True CI01000306_11247260_11249148
CI01000306_11345580_11366175.mRNA mRNA downstream 168430 11345294 ~ 11366235 (+) True CI01000306_11345580_11366175
CI01000306_11383411_11392095.mRNA mRNA downstream 206370 11383234 ~ 11392286 (+) True CI01000306_11383411_11392095
TU501504 other upstream 78017 11082988 ~ 11098376 (+) True G436932
TU501503 other upstream 78360 11082988 ~ 11098033 (+) False G436932
TU500080 other upstream 1283154 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 1291474 9879920 ~ 9884919 (+) True G435639
TU500062 other upstream 1313204 9860480 ~ 9860515 (+) True G435631
TU501617 other downstream 92894 11269758 ~ 11271160 (+) True G437030

Expression Profile