RNA id: TU501583


Basic Information

Item Value
RNA id TU501583
length 400
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G436997
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 11179463 ~ 11179862 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTTTATAACTCGCAATTCTGACTTTATATCACAATTCTGAGATGTAAAGTCAGAATTGTGAGATGCAATCTTGCATTTGCAAGAAAAAAGCCAGAATTGTAATAAAAAAAATTGCAATTACCTTTTTCATTTTTTTATTTAGTGGCAGAAACAAGCTTCCATAGAATATGCATCCCATACAGTACAAAAGTTTATTGTTTTTGAAAGATGTAATTGAAAAAATGTAATTTATTCCTGTGAACAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTATTATGCTGATTTGCTGCTCAAGAAACATTTCAGATTATTATCAATGTTGAAAACAGTTGTGCTGCTTCATATTTTTGTGGAACTGAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501579 lncRNA upstream 2599 11176393 ~ 11176864 (+) True G436993
TU501581 lncRNA upstream 8163 11168915 ~ 11171300 (+) True G436995
TU501582 lncRNA upstream 12461 11166789 ~ 11167002 (+) True G436996
TU501580 lncRNA upstream 15363 11163312 ~ 11164100 (+) True G436994
TU501525 lncRNA upstream 50399 11127555 ~ 11129064 (+) True G436952
TU501514 lncRNA downstream 13783 11193645 ~ 11196482 (+) True G436941
TU501530 lncRNA downstream 17391 11197253 ~ 11197635 (+) True G436957
TU501517 lncRNA downstream 18134 11197996 ~ 11198328 (+) True G436944
TU501516 lncRNA downstream 20328 11200190 ~ 11200431 (+) True G436943
TU501584 lncRNA downstream 22138 11202000 ~ 11202215 (+) False CI01000306_11202677_11210993
CI01000306_11139228_11152171.mRNA mRNA upstream 27245 11139228 ~ 11152218 (+) True CI01000306_11139228_11152171
CI01000306_11107383_11122980.mRNA mRNA upstream 56088 11107299 ~ 11123375 (+) True CI01000306_11107383_11122980
CI01000306_11052174_11076357.mRNA mRNA upstream 102967 11052174 ~ 11076496 (+) True CI01000306_11052174_11076357
CI01000306_10975455_10976511.mRNA mRNA upstream 202368 10975327 ~ 10977095 (+) False CI01000306_10975455_10976511
CI01000306_10775550_10815981.mRNA mRNA upstream 363387 10775346 ~ 10816076 (+) False CI01000306_10775550_10815981
CI01000306_11181222_11192574.mRNA mRNA downstream 1360 11181222 ~ 11192640 (+) True CI01000306_11181222_11192574
CI01000306_11202677_11210993.mRNA mRNA downstream 21747 11201609 ~ 11211208 (+) False CI01000306_11202677_11210993
CI01000306_11247260_11249148.mRNA mRNA downstream 66811 11246673 ~ 11249173 (+) True CI01000306_11247260_11249148
CI01000306_11345580_11366175.mRNA mRNA downstream 165432 11345294 ~ 11366235 (+) True CI01000306_11345580_11366175
CI01000306_11383411_11392095.mRNA mRNA downstream 203372 11383234 ~ 11392286 (+) True CI01000306_11383411_11392095
TU501504 other upstream 81087 11082988 ~ 11098376 (+) True G436932
TU501503 other upstream 81430 11082988 ~ 11098033 (+) False G436932
TU500080 other upstream 1286224 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 1294544 9879920 ~ 9884919 (+) True G435639
TU500062 other upstream 1316274 9860480 ~ 9860515 (+) True G435631
TU501617 other downstream 89896 11269758 ~ 11271160 (+) True G437030

Expression Profile