RNA id: TU501514


Basic Information

Item Value
RNA id TU501514
length 2838
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G436941
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 11193645 ~ 11196482 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACTTTTACAAAGTCCGTTCCCTCACCGTGTCTTGACTTTGCATGTAGCAGCCAAGGCAAATCTTATAGAGTACCACATTTCAAGACAATTAAAAAGGTATATTTTATAATAACTAGACATGTAGTCATTTTATATAAACTGGTTAACACTTAAGTACTGTATAGTTTATTTACAGCATGTTCATGCTAGGAAATAAAATTACATAAAAGTACGGAGTACACAAGTAAACACCAATATGGTATAAAATATATAAAATGTGATGGTAAACAACTAGTGATAAAATGGTTAAGGCTTAAAATGTGTAAAATTAACATGTTAGTTGTTAATATTTAAACATGATAATAAGTATAAACATGTATAATAAGCCAAGGAGGTATTCTAGACATCGATGCAGCTACACAAATCTCATGGGCAACTCGACATTATAATCCAGCTCTTTTACCCCCAATATTGTTCTGTCCTGTGTGAAATTTAGAACAGCATATGGCTGAATAGTTATATTTCACCCCGAAAATCAAATGAAAAAATACAAAATTGTATTTTGAATAAATGAAAATGAAGCCTGTTTGTAGGACCATTGTTTGCATTTTTATGACAATTAAGAGCATTTTCCCAAAAAATTCCCCCAAACCAAAAAAAAGAAAAAAGAAAATCTCATTTCTGTAATACAGTAATAAATACTGTCTGGACAGGACCTCATTTTTTATTCCAAATTATTATTAATATTTAATATTAAAATAAAAGCTTAATATAACTGTAACACTTTACAATAAGGTTTCATTTGTTAACATTAGTTAACTACACTAACTAACAATGAACAATACTTCTACAACATATTATTCTGAGCTAATGTTAGCAAAAGTTGAAATTGTTATTAGTTAATGGACCGTGAACTAACAAACAATGAACAACTGTATTTTTATTAACTAACAAAGTGTGTGAATTTGAGGGGGTGAGAGCAGAAAAAGAGAGCATGTGCTTTCTGTACATAATAAAACGTAATTGTGTTGCAAAAATCATGGGAATAATTTGTCATTTTTATCCTATTTATTATATATTATATTTTAGTGCTGTCAAATTGATTGATCGTGATTAATCACATCTAAAATAAAAGTTTGTAAGGACTTTTGAAATAACTGAAATCATTTGGCGAAGTGATATGGAACTGTAATGCGGTCAAGACCTGCCTGGAACTACTTTAGCTGTGCGTTACCCTGAAAATAATTGCACATTTGTCAGCCAATCAGATTCAAGCATTCAACAGCCCAGCCAGTAGTATAATAAAGATTAGGGGTCGACCGATTATCGGCGCCGATATTAAGCATTTTTATGGTTATCGTATTGGTCATTTTCGAAACCGATTTTCAGAAAATAATTGAACTTTTAAATGCGCTATTTGGCTCTGATGCAGCCACCTCTGTCAGAACTCACCACTCTGTGGCCTAGAGCAAGCTCCGCCCACCACCCATCTGATTTGTTGGGAGTCACGAGTCCGACCAATCAACGTGAAAGGCTGAAGGCACTAAAAGTTTTGCATTCTCACACTCTCACAGAGCCCTTGTTATTCTTAATTTTGACATTAATTTTCATTTTTACACCAGACATATATATCGGTTCAAAATATCGGTTATCGGTTTACTTGATCTGTAATAATCGGTATCGGCCCTGAAAAACACATACTGGCCCACTCCTAACAAAGATCAATGATTGTTGTAAGAAATGTATCGCTCACTGTTAGTTCATTAACTAATGTTAACAAATGAGACCTTATTGTAAAGTGTTACCAATACAACAAATACTACCAAATTCTACCATACTTACCCTTCATTTTCTTTATGCAAAATATAAGATTGTGGACATTTCTTGACAGTTTTCACCCATCTAGAATGTCAAATGCATGCTGACATCCGCAACATAACGCAAGGGGTTTGAGTCGTCACAGGTTTACACTTTTATAAAGTGTAAATTCTAAACGCTATAAGTGTCCATTCTGAAACATCCAAATTTTTCTGCCATTTTCATATTCCATTTTTTGGCACCAGACCACTAAACAAATTGGTAAAGCACTAAGATTTGTCTATAAAGTCCTCTGCAGATTTGTAACAGTCCTCTTGAGAAGTTTACTTTAATGCTAAAGCTATTTTTTAGTACAATTTCCCTACAAGCAAGGAAATGACAACATTTTACGATTGACATTATCAAAACACAAGACCATTGGTCTCTAAACCAACTTTGAGTTGCCCAAAAGAAGGGGATTTTTCCCAGACAGCATAGAAAAATATGAGAGGAGGTACTGGACTTGGTCCAAGCTTAAAACATACAACGTATGTCTTCTGATTTTATAATGCATAATACCTACAGTCCCAAACGTTTAGCTGCCAAGAGCAATGCCTTTATTGTCATAACAGACCAGAAACGTTTAAAGCCAAAACTGTGTGGCCTGAAAGTGCTGTGAAACCATCTTTGGATTTCCCGATTGTTCCCTCTCAACTCAACAATGAGTTCAAGAAGAGGAACGCGTGTAACAGAACCTTCCCAAATCGCTGCTGTGTTTTGAGCCTCTATCCACACAGTCTAATACCTTTTGGAATGTTCTCAAAAAGTAAAACAAACAAACAAACACACACACACACACAAAAAAAACTGTAATGTCAAACCACCAAGAACAGGCGATTTCGCTTGCTTATGCCAAGGTTGGGAAAGACTGACCGCAGGACCGGGAAGCTTAGATGAGGGAAATGCGAACGGGAACGTTGGGGGATTCGGTCCTTTGCGGCGAGTGTTGACTCACTAGATGTTCTACCACCGTGTGCTTAGACATGTGCTTCATTAGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501583 lncRNA upstream 13783 11179463 ~ 11179862 (+) True G436997
TU501579 lncRNA upstream 16781 11176393 ~ 11176864 (+) True G436993
TU501581 lncRNA upstream 22345 11168915 ~ 11171300 (+) True G436995
TU501582 lncRNA upstream 26643 11166789 ~ 11167002 (+) True G436996
TU501580 lncRNA upstream 29545 11163312 ~ 11164100 (+) True G436994
TU501530 lncRNA downstream 771 11197253 ~ 11197635 (+) True G436957
TU501517 lncRNA downstream 1514 11197996 ~ 11198328 (+) True G436944
TU501516 lncRNA downstream 3708 11200190 ~ 11200431 (+) True G436943
TU501584 lncRNA downstream 5518 11202000 ~ 11202215 (+) False CI01000306_11202677_11210993
TU501585 lncRNA downstream 5778 11202260 ~ 11202547 (+) True CI01000306_11202677_11210993
CI01000306_11181222_11192574.mRNA mRNA upstream 1005 11181222 ~ 11192640 (+) True CI01000306_11181222_11192574
CI01000306_11139228_11152171.mRNA mRNA upstream 41427 11139228 ~ 11152218 (+) True CI01000306_11139228_11152171
CI01000306_11107383_11122980.mRNA mRNA upstream 70270 11107299 ~ 11123375 (+) True CI01000306_11107383_11122980
CI01000306_11052174_11076357.mRNA mRNA upstream 117149 11052174 ~ 11076496 (+) True CI01000306_11052174_11076357
CI01000306_10975455_10976511.mRNA mRNA upstream 216550 10975327 ~ 10977095 (+) False CI01000306_10975455_10976511
CI01000306_11202677_11210993.mRNA mRNA downstream 5127 11201609 ~ 11211208 (+) False CI01000306_11202677_11210993
CI01000306_11247260_11249148.mRNA mRNA downstream 50191 11246673 ~ 11249173 (+) True CI01000306_11247260_11249148
CI01000306_11345580_11366175.mRNA mRNA downstream 148812 11345294 ~ 11366235 (+) True CI01000306_11345580_11366175
CI01000306_11383411_11392095.mRNA mRNA downstream 186752 11383234 ~ 11392286 (+) True CI01000306_11383411_11392095
CI01000306_11480178_11484239.mRNA mRNA downstream 281043 11477525 ~ 11484376 (+) True CI01000306_11480178_11484239
TU501504 other upstream 95269 11082988 ~ 11098376 (+) True G436932
TU501503 other upstream 95612 11082988 ~ 11098033 (+) False G436932
TU500080 other upstream 1300406 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 1308726 9879920 ~ 9884919 (+) True G435639
TU500062 other upstream 1330456 9860480 ~ 9860515 (+) True G435631
TU501617 other downstream 73276 11269758 ~ 11271160 (+) True G437030

Expression Profile