RNA id: TU501530


Basic Information

Item Value
RNA id TU501530
length 383
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G436957
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 11197253 ~ 11197635 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATACGGCCGATCACCTGTGTGGATTCTGTAGAATGCAAAAAACGCATACACAAGATTAAATGTCTTACAATCTCAAAATATCCTAGTTCATTCTGGTAATACCATGCCATCGCCATTTGTATTTGTACACAGCACGAGCTCTTGTATAACTGAGGCTGAAGAAGAACCTGGTGTGCTGCTGTAAGTGGGAGAGCTGGCGGAAGGATTTCTCGCAGTAGGAGCAGTGATACGGCTTGACTCCCAGGTGAATGCGCAGGTGCTGCGACAGGTAGGACGCGTTGGCGAAGGACTTGGTGCAGTGAGGGCACTTGTGTGGCTTTGCTTCTGTGTGAGACTTGGAGTGTATCTGCATGTCTGACTTGGAGAAGAACGTCAGCGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501514 lncRNA upstream 771 11193645 ~ 11196482 (+) True G436941
TU501583 lncRNA upstream 17391 11179463 ~ 11179862 (+) True G436997
TU501579 lncRNA upstream 20389 11176393 ~ 11176864 (+) True G436993
TU501581 lncRNA upstream 25953 11168915 ~ 11171300 (+) True G436995
TU501582 lncRNA upstream 30251 11166789 ~ 11167002 (+) True G436996
TU501517 lncRNA downstream 361 11197996 ~ 11198328 (+) True G436944
TU501516 lncRNA downstream 2555 11200190 ~ 11200431 (+) True G436943
TU501584 lncRNA downstream 4365 11202000 ~ 11202215 (+) False CI01000306_11202677_11210993
TU501585 lncRNA downstream 4625 11202260 ~ 11202547 (+) True CI01000306_11202677_11210993
TU501586 lncRNA downstream 5627 11203262 ~ 11203516 (+) True G437000
CI01000306_11181222_11192574.mRNA mRNA upstream 4613 11181222 ~ 11192640 (+) True CI01000306_11181222_11192574
CI01000306_11139228_11152171.mRNA mRNA upstream 45035 11139228 ~ 11152218 (+) True CI01000306_11139228_11152171
CI01000306_11107383_11122980.mRNA mRNA upstream 73878 11107299 ~ 11123375 (+) True CI01000306_11107383_11122980
CI01000306_11052174_11076357.mRNA mRNA upstream 120757 11052174 ~ 11076496 (+) True CI01000306_11052174_11076357
CI01000306_10975455_10976511.mRNA mRNA upstream 220158 10975327 ~ 10977095 (+) False CI01000306_10975455_10976511
CI01000306_11202677_11210993.mRNA mRNA downstream 3974 11201609 ~ 11211208 (+) False CI01000306_11202677_11210993
CI01000306_11247260_11249148.mRNA mRNA downstream 49038 11246673 ~ 11249173 (+) True CI01000306_11247260_11249148
CI01000306_11345580_11366175.mRNA mRNA downstream 147659 11345294 ~ 11366235 (+) True CI01000306_11345580_11366175
CI01000306_11383411_11392095.mRNA mRNA downstream 185599 11383234 ~ 11392286 (+) True CI01000306_11383411_11392095
CI01000306_11480178_11484239.mRNA mRNA downstream 279890 11477525 ~ 11484376 (+) True CI01000306_11480178_11484239
TU501504 other upstream 98877 11082988 ~ 11098376 (+) True G436932
TU501503 other upstream 99220 11082988 ~ 11098033 (+) False G436932
TU500080 other upstream 1304014 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 1312334 9879920 ~ 9884919 (+) True G435639
TU500062 other upstream 1334064 9860480 ~ 9860515 (+) True G435631
TU501617 other downstream 72123 11269758 ~ 11271160 (+) True G437030

Expression Profile