RNA id: CI01000308_00012346_00036304.mRNA


Basic Information

Item Value
RNA id CI01000308_00012346_00036304.mRNA
length 5286
RNA type mRNA
GC content 0.41
exon number 28
gene id CI01000308_00012346_00036304
representative True

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 11975 ~ 36413 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTACATTGAAGCACACACCCTCTTCTCTCTGATCAGACCCCTAAGATCATTTGTAACATTGTTCAAAACAGGGTTTCGGGAGTTGCTGTTCATCTAAACTCTACAGCTATGGACTCAAGAACGGTGTTTGTCTTATTATGGATGTTACTGTTGTCCACCTCCACTGGAATCAAACTAGATGGAAATGGTTATGTTGGCGTCACCATTGCAATCAGTTCAAGAGTACCACAGGATAACACGCTCATTGATAAAATCAAGGACATGGTCACTAAAGGGTCGTTTCATCTTCATCAAGCATTGGATAAAAAGGTCTATTTCAAAGAAGCAACGATATTAGTTCCACCCCACTGGAATAGTAAGGAATTTACCAAAGCAAGAGCAGAGTCCTATGAAAAGGCAAAAATAAGAATTGATAATGCTAATCCAGCATATAGTGATGAACCTTACACTCATCAGTATGTTGAATGTGGAGCTGAGGCTCAGTACATTCATTTCACCCCAAACTTCCTCCGAGACGACAAACTCATTAAGACTTATGGGTCAAGAGGAAAGGTCTTGGTTCATGAATGGGCTCATCTGAGATGGGGCGTGTATGATGAATACAGTGAAACAAAACCATTCTACTACTCTAATGGCCGTATTAAAGCTACAAGGTGTAGCAAAAACATTGAAGGTCAGTTTTATGATGAATCACTTCGACCGTGCCACACTGATCCACAAACTTTACTACCAACTAAGGGAATCCTTCGACTACAGCAGGCTGCCTCACATTTCCTGCTAAACAACATTGAGGATCAAGCCAGTGTTGGAATTGTAACCTTTAGTACTAATGCTTATACTCTGAGCCCCTTGACAAAACTGTATGCATCTGAGAAACTCATCAAATTGTTGCCAAAAGTAGCAGCGGGAGTGACATACATATGTAAAGGCCTCAATCTAGGTTTACAGGTACTCAAAAAAGACAACGGGGATGTGATAGGGGATGAAATCATTTTTCTGACAGATGGTGAAGCGACTGACAACATTACTAGTTGTGTTCCCTCTGCAACTGAAAGTGGCACCATTATACACACAATAGCTTTGGGTGATAAAGCAGATAAAGCACTGAGGGAAATGGCTGACAAAACTGCTATGGACTCAAGAAAAGTGTTTGTCTTATTATGGATGTTGCTGTTGTCCACCTCCACTGGAATCAAACTAGATGGAAATGGTTATGTTGATGTTACCATTGCAATCAGTTCAAAAGTACCACAGGATAACACGCTCATTGATAAAATCAAGGACATGGTCACTAAAGGGTCGTTTCATCTTCATCAAGCATTGGATAAAAAGGTCTATTTCAAAGAAGTAACGATATTAGTTCCACCCAACTGGAATAGTAAGGAATTTACCAAAGCAAGAACAGAGTCCTATGAAAAGGCAAAAATAATAATTGATAATGCTAATCCAGCATATGGTGATGAACCTTACACTCTTCAATATGGTGAATGTGGAGCTGAGGCTCAGTACATTCATTTCACCCCAAACTTCCTCCGGAACGACAAACTCATTAAGACTTATGGGTCAAGAGGGAAGGTTTTGGTTCATGAATGGGCTCATCTGAGATGGGGCGTGTATGATGAACACAGTGAAACAAAACCATTCTACTACTCTAATGGCCGTATTGAAGCTACAAGGTGTAGCAAAAACATTGAAGGTCAGTTTTATGATGAATCACGTCAACCGTGCCACACTGATCCACAAACTTTACTACCAACTAACGGGTGCAAGTTTTATCCTAACAAATATCAAAACACAGACAGCTCTATAATGTTCCTACCAAGTCTGGATTCTGTGAGCACATTTTGTCGTGAAAACGAGCACAATTATGAAGCCCCAAACTTGCAAAACAAAAAATGTGGCAAAGCAACACGGACTGTGATATTTGAGGATTCTGTTGATAAAGACGCACTTCGTTCTCTGAAACCACTGCTGTCCTCTCCACCAGCGCCATCTTTCACAGTTGTGCAGCGATTGCATCGGGTTGTTTGTCTCGTCCTTGATGTCTCAGGAAGCATGAAAGGCCCCAGAATCCTTCGACTACAGCAGGCTTCCACACATTTCCTGCAGAACATCATTGAGGATCAAGCCAGTGTTGGAATTGTAACCTTTAGTACTAATGCTTATACTCTGAGCCCCTTGACTACTATTGATGATTCCACACGAGAGAAACTCGTCAAATTGTTGCCAAAAGTAGCAGAGGGATGGACATACATATGTAAAGGCCTCAATCTAGGTTTACAGGTACTCAAAAAGGACAACGGGGATGTGATAGGGGATGAAATCATTTTTCTGACAGATGGTGAAGCAACAGACAATATTAATAGTTGTGTCCCAGCTGCAATTAAAAGTGGCGCCATTATACACACAATAGCTTTGGGTGATAAAGCAGATAAAGCACTGAGGGAAATGGCTGACAAAACTGGAGTTGCTGTTCTTCAGATCTCTACAGCTATGGACTCAAGAACGGTGTTGGTCTTATTATGGATGTTGCTGTTGTCCACCTCCACTGGAATCAAACTAGATGGAAATGGTTATGTTGATGTTACCATTGCAATCAGTTCAAGAGTACCACAGGATAACACCCTCATTGATAAAATCAAGGACATGGTCACTGAAGGGTCGTTTCGTCTTCATCAAGCATTGGATAAAAAGGTCTATTTCAAAGAAGCAACGATATTAGTTCCACCCCACTGGAATAGTAAGGAATTTACCAAAGCAAGAGCAGAGTCCTATGAAAAGGCAAAAATAATAATTGATGACGCTAATCGAGCATATGGTGATGAACCTTACACTCATCAGTATGGTGAATGTGGAGCTGAGGCTCAGTACATTCATTTCACCCCAAACTTCCTCCGAGACGACAAACTCATTAAGACTTATGGGTCAAGAGGAAAGGTCTTGGTTCATGAATGGGCTCATCTGAGATGGGGCGTGTATGATGAATACAGTGAAACAAAACCATTCTACTACTCTAATGGCCGTATTGAAGCTACAAGGTGTAGCAAAAACATTGAAGGTCAGTTTTATGATGAATCAAATCGACCGTGCTACACTGATCCACAAACTTTACTGCCAACTAAGGGGTGCAAGTTTTATCCTAACAAATATCAAAACACAGACAGCTCTATAATGTTCCTACCAAGTCTGGATTCTGTGATCACATTTTGTCATGAAAACGAGCACAATTATGAAGCCCCAAACTTGCAAAACAAAAAATGTGGCAAAGCAACATGGACTGTGATATTTGAGGATTCTGTTGATAAAGACGCACTTCGTTCTCTGAAACCACTGCTGTCCTCTCCACCAGCGCCATCTTTCAAAGTTGTGCAGCGAATGCATCGGGTTGTTTGTCTCGTCCTTGATGTCTCAGGAAGCATGAAAGACTCCAGAATCCTTCGACTACAGCAGGCTTCCACACATTTCCTGCAGAACATCATTGAGGATCAAGCCAGTGTTGGAATTGTAACCTTTAGTTCCGGTGCTTCTACTCTGAGCCCCTTGACTACTATTGATGATTCCACACGAGAGAAACTCGTCAAATTGTTGCCAAAAGTAGCAGATGGAGGGACATTCATATGTAAAGGCCTCAATCTAGGCTTAGAGGTACTCAAAAAGGACAATGGGGATGTGATAGGGGATGAAATCATTTTTCTCACAGATGGTGAAGCATCGGACGATATTAATAGTTGTGTCCCAGCTGCAATTAAAAGTGGCGCCATTATACACACAATAGCTTTGGGTGATAAAGCAGATGAAGCACTGAGGAAAATGGCTGCCAAAACTGGGGGGAAATTTATCACAGCCAGTGATGACATTCTCTCTAATCAGCTACTGAATGGATTTTCTTCACTTACAATACCAACAGGAGATCAAACAAAAGACCCAGTTCAGATAGACAGTGTGGGAATAAAAACATCAGACTGGTTCAATGGGACAATATTAGTGGATCAGACCATTGGTACCAAAACCAGCTTTACAATAACCTATGAAAAAAGTTTACCTGACATTTCCATACATTCACCAAGTGGCTCAACCTACAAACAAGTACAGATGCGTCATGATAAAGCAGCAAAAACAGTCACTTTTAAAGTTCCAGGAACTGCAGAGCCTGGGGACTGGAAGTACAGTATCCAAACTACAATAAGTCAGTCTCTGACTATAACAGCAACGAGTCAAGCGGCGCGTGCTGATGTTCCTCCTATCGTTCTCAAAGCCCGCATGAACCAGCAGTTCAGTGACGGCACTAAACCCATGATAGTGTTTGCTGAGGTCAGTCAGAATTACAAGCCTGTAATAAAGGCTGAAGTGTGGGCTACGCTGGAGTCCGAATCTGGGTCCGCACAAGAATTACAACTTCTGGACAATGGAGCAGGTGTGGTGGAGCTGAACCCTCCAAAGCCTCCAGTTTCTGAGGAATCACTCGAGGTTGGAAGATTTACAAGGACAGCCACTGGAGAGAGTTTTGAGGTGGCTTTTACAGGCTCAACCCCACCAAATTTCCCTCCTAACAGAATCACAGATCTGAGTGCTGAGATCCAGGAGGACTCTGTGCTTCTCAACTGGACGGCTCCTGGTGAGGACCTCGACCAAGGGACAGCTAAATCCTATGAGCTCAGGTGGAGCTTTGACCTTAAAGTGCTTCAATTCAACTTCAGCAATGCTCACGTATTCAACACAACTGCTATCTCACCGCAGGAGGCTGGATCAGTTGAACAGCATTCATTCAATCCTAATATCACTATACAAAATGGCACCACAATCTTTTTTGCTGTTCAGTCTGTGGACAAAGAAAATGTAAAATCTGAAATCTCCAACATTGCTCAAGCTTCAAAGATGCTCCCTGGTCCAAAACCACACACATGCCAGAAATAGACCTGAAGTTGATGTTCATTGCAATTTCTGTTTGTCTGGCAACTGTGGTGATTGTTGGTATTATTGCGATAACAACATGGGCGTTGAGTCGAAGAAAACTTTCTGGTTTTTAGATTACCACCAACATTAATATCTGATGCAAAGAAAATCTTTCTGTTGTACAATTACTGCGCTGCATTTTCTTTAGTTGTACACCATATGCTTGGCAAAAATATAAAATGCAAAATACAGTTTGGTAAATTGTTTAGATTTGTTTATATTGGAAATGTTTGGCATATAATTAAACTCTCTCAGATGATGACTGCTGTTCAGTTCTTGTTTTTGTTTTTTGCTTTAGCTATTGTTGTGTACCCTGAATATAATCAAATAAA

Function

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process

KEGG:

id description
K05030 CLCA3_4; calcium-activated chloride channel regulator 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU502261 lncRNA upstream 12320 48733 ~ 48981 (-) True G437593
TU502262 lncRNA upstream 12821 49234 ~ 49462 (-) True G437594
TU502288 lncRNA upstream 75415 111828 ~ 112172 (-) True G437620
TU502290 lncRNA upstream 77912 114325 ~ 114628 (-) True G437622
TU502293 lncRNA upstream 83538 119951 ~ 120204 (-) True G437625
CI01000308_00003475_00004723.mRNA mRNA downstream 7148 3297 ~ 4827 (-) True CI01000308_00003475_00004723
CI01000308_00041387_00048067.mRNA mRNA upstream 4934 41347 ~ 48253 (-) True CI01000308_00041387_00048067
CI01000308_00110535_00111604.mRNA mRNA upstream 73188 109601 ~ 111658 (-) True CI01000308_00110535_00111604
CI01000308_00474123_00482394.mRNA mRNA upstream 437651 474064 ~ 483464 (-) True CI01000308_00474123_00482394
CI01000308_00529728_00530015.mRNA mRNA upstream 493205 529618 ~ 530145 (-) True CI01000308_00529728_00530015
CI01000308_00711286_00720426.mRNA mRNA upstream 674803 711216 ~ 720712 (-) True CI01000308_00711286_00720426
TU502303 other upstream 98895 135308 ~ 135685 (-) True G437635
TU503204 other upstream 911143 947556 ~ 953628 (-) False G438434
TU503464 other upstream 1741182 1777595 ~ 1782581 (-) True G438671

Expression Profile