RNA id: TU502560


Basic Information

Item Value
RNA id TU502560
length 658
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G437854
representative True

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 1046446 ~ 1048498 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAAACGGAGAAACAACAACTGACAAGCAGCAAAAACAGCAGTTTCTCGCTGTTGTTTTCACTCTTTTCAGAAACAGTTTAGTGTCTTCGAAAAACTCCGTTAGCATCCCGTTTTCAGAAGAGCAGCAACAAAATAACCCCTCTACAACAGAGGGGAAGCTCCGAAGATTTCAACATTTCTGAAGGAAGCTGCTGACAGAAGGAAACAGATACTTCCCTGCTGATGCCTTGCACCATAGCAGAGTTGGAGCGGATAAAAAAGTTCCTTTCGGACCACATGACTAGATGCCCAGCAAGGTTACTAGGATTACGGCAGCTCAAGTTTGGATCCAGCCTCACTTGTGAAGACTTCAGATGATGGAAACTATAGATGGACATACAAAACTAACAGATATTATCCTTATATTGTAATCATTGGTCCGGGTTCACAGACAGGGCTTAGATTAAGTCAGGATTAGGTCTTAGTTAAATTAGGACATTTAAGTAGCTTTTTTAAACATGCTTTAGAAAAAAATAAAAAAACATTACTGTTGTGCATCTTGACACAAAGCAATGACACTGACATATTTTAAGATATGCTTTAAGTTAAAGGGCTAGTTCACTCCAAAATTACATTTCTGTCATTAATTATTCACCCTCTTGTCGTTCCAAACCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU502559 lncRNA upstream 153211 878439 ~ 893235 (+) True G437853
TU502651 lncRNA upstream 214293 831892 ~ 832153 (+) True G437941
TU502649 lncRNA upstream 223296 822724 ~ 823150 (+) True G437939
TU502648 lncRNA upstream 223785 822389 ~ 822661 (+) True G437938
TU502627 lncRNA upstream 238299 785964 ~ 808147 (+) True G437917
TU502663 lncRNA downstream 6117 1054615 ~ 1058043 (+) True G437952
TU502698 lncRNA downstream 36838 1085336 ~ 1087243 (+) True G437985
TU502534 lncRNA downstream 62260 1110758 ~ 1114271 (+) False G437837
TU502533 lncRNA downstream 62871 1111369 ~ 1114271 (+) True G437837
TU502544 lncRNA downstream 89088 1137586 ~ 1139213 (+) False G437843
CI01000308_01003736_01006059.mRNA mRNA upstream 39329 1003736 ~ 1007117 (+) True CI01000308_01003736_01006059
CI01000308_00983925_00991307.mRNA mRNA upstream 55057 983925 ~ 991389 (+) True CI01000308_00983925_00991307
CI01000308_00836074_00942387.mRNA mRNA upstream 104059 836074 ~ 942387 (+) True CI01000308_00836074_00942387
CI01000308_00770560_00784179.mRNA mRNA upstream 260650 770272 ~ 785796 (+) True CI01000308_00770560_00784179
CI01000308_00695140_00699646.mRNA mRNA upstream 346545 695140 ~ 699901 (+) True CI01000308_00695140_00699646
CI01000308_01132580_01134190.mRNA mRNA downstream 83527 1132025 ~ 1134414 (+) True CI01000308_01132580_01134190
CI01000308_01594565_01626825.mRNA mRNA downstream 546067 1594565 ~ 1626825 (+) True CI01000308_01594565_01626825
CI01000308_01645574_01648364.mRNA mRNA downstream 597035 1645533 ~ 1648567 (+) False CI01000308_01645574_01648364
CI01000308_01667660_01683460.mRNA mRNA downstream 619162 1667660 ~ 1683598 (+) True CI01000308_01667660_01683460
CI01000308_01751621_01754826.mRNA mRNA downstream 703043 1751541 ~ 1755020 (+) True CI01000308_01751621_01754826

Expression Profile