RNA id: TU502534


Basic Information

Item Value
RNA id TU502534
length 654
lncRNA type antisense_over
GC content 0.52
exon number 5
gene id G437837
representative False

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 1110758 ~ 1114271 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGGGAGGCTTCAGATGGCTTGTTGTTTTGTTCGCTGATGTCACACACTGCATGTTCGTGTAAATTTACTTACTGCCGGAGATGAGGTAAGTGCCTTTAGGGTCTGTGGTAAGACAGGTTACAGCATCCAGGTGAGCCACCATGGAATGGATCACTTTCCCTGTCTTGTTGTCCAGGTAGCGGATGGTACGATTCTCGTGGGCTGTAATGGAAATCGGTTGGGAAGGATGGCTGACCACGCGGTTAATAAGCTCGCTGCCATCCTTAGTCTGGGTCTCCAGGACCATGATGCTTTGCTCTGTGTTGAGGTCATAAAGCAGAGTCTCGCCCCCATCGAAAGACACAACAACCTGGGATGGGTCAGTGTTTACAAAGGCAACCGAGGTGGGAGTGCCGTGTTCTTTCTCCTTGTTGAAAACAGACACACACGGTGAGGAATTATGGGGGTCCCAAATCCGCACGGTCCCATCTGCTGAGCAGGAGGCCAAACGCTTCAGGCTGGAGGAGTAAGCCAATCCCCACACTGCGTCTTCATGCCCTGACAACACGCTGCTCTCCACACCTGGATCATAGTTGTCGTAAGGATCCACATTAAGGTCTGGAATCTTCCAGCCTCGCACGGTGCCATCCAGACCGCCGCTGTAGCATGATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU502698 lncRNA upstream 23515 1085336 ~ 1087243 (+) True G437985
TU502663 lncRNA upstream 52715 1054615 ~ 1058043 (+) True G437952
TU502560 lncRNA upstream 62260 1046446 ~ 1048498 (+) True G437854
TU502559 lncRNA upstream 217523 878439 ~ 893235 (+) True G437853
TU502651 lncRNA upstream 278605 831892 ~ 832153 (+) True G437941
TU502544 lncRNA downstream 23315 1137586 ~ 1139213 (+) False G437843
TU502547 lncRNA downstream 23315 1137586 ~ 1167949 (+) True G437843
TU502834 lncRNA downstream 298083 1412354 ~ 1412696 (+) True G438099
TU502835 lncRNA downstream 298480 1412751 ~ 1413110 (+) True G438100
TU502750 lncRNA downstream 306749 1421020 ~ 1533788 (+) True G438032
CI01000308_01003736_01006059.mRNA mRNA upstream 103641 1003736 ~ 1007117 (+) True CI01000308_01003736_01006059
CI01000308_00983925_00991307.mRNA mRNA upstream 119369 983925 ~ 991389 (+) True CI01000308_00983925_00991307
CI01000308_00836074_00942387.mRNA mRNA upstream 168371 836074 ~ 942387 (+) True CI01000308_00836074_00942387
CI01000308_00770560_00784179.mRNA mRNA upstream 324962 770272 ~ 785796 (+) True CI01000308_00770560_00784179
CI01000308_00695140_00699646.mRNA mRNA upstream 410857 695140 ~ 699901 (+) True CI01000308_00695140_00699646
CI01000308_01132580_01134190.mRNA mRNA downstream 17754 1132025 ~ 1134414 (+) True CI01000308_01132580_01134190
CI01000308_01594565_01626825.mRNA mRNA downstream 480294 1594565 ~ 1626825 (+) True CI01000308_01594565_01626825
CI01000308_01645574_01648364.mRNA mRNA downstream 531262 1645533 ~ 1648567 (+) False CI01000308_01645574_01648364
CI01000308_01667660_01683460.mRNA mRNA downstream 553389 1667660 ~ 1683598 (+) True CI01000308_01667660_01683460
CI01000308_01751621_01754826.mRNA mRNA downstream 637270 1751541 ~ 1755020 (+) True CI01000308_01751621_01754826

Expression Profile