RNA id: TU504536


Basic Information

Item Value
RNA id TU504536
length 4043
RNA type TUCP
GC content 0.39
exon number 3
gene id G439538
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1222006 ~ 1239405 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGATTTTGTGAAAATTAAGGCCTTAAATGGCATTAAAAAGCATTAAATTTTGTTTCTACAGGCATAAAATTTTTTTAGATAGTTTTAAAGAAAAATAATACTACCAGTTTGTTTTGAATGAAGCCTAAATAATTAATAACTTTGATTTGCTGTCACAAAATATGTACATTTGTGTGATACACACACGGAACCAGTTTGGTAATTGCCTCCGGCCGGTGCGGGCTGGGACATGGAGACAAAAGGCTGCATCAGTGTTGCCAACTTAGCGCCTTTTCAAGCCCCTTTTACGACTTTTTTTCTAAGAAAGCGCGTTGTGACTTGTGAGCTTCCGAGACCCCCTGGTACTATCGCGAGGCGAAGTCTTGCCTTCCTGCTGCAGGCGCACCTCTCTGGTTCAGCAGTGCATTCAGTTGAGGATGTGTTGTCAGAGAACAAATAAAATATACTATTGCTTCTAACCTGAGTGATCATTTTACGTGTACATATAGCAAAATTCACAGCAAATGTCTTTATTTTATGTGTATGGTGATTTTTGTCAGACAACGTCTCGATTATAAATCAGGATTTTAGTGCTGGTTTAACATGTCAGGGCTCGAACTTTACTTTCTCGACCGGACAAGGACCTGATTAAAACGTCAAAAAAAAAAAAAAACAGCAACTTGGGAATCACCAAAACGCAAGTATGACTGATTTTATTACATTTAGTGTTTGTGGCGATCGATAGTGGATAATAATAGGCTGTATAATGTAGCCTACTGACGATAACAAGTTTGCGCTGTTGAGGCTCGCGCAACATCTGGAGGAGAAATGAAAATGAAAATAGTTTCAAACAAAGATCACAGCAGTACCAAAGCGCAACACTCAGCTATTTTCATTTCTGAATGATTCAGCGTTTTGAACGAATCGGTTGAGTCAAAGATTAAATGACCCATTCATAAACAACTGCCTCATTCTTGAATGAATCAGCCATTTGAATGAATCGTTTGAATGAATGAATCAATGACCCACTCATTAAGCGGTTTACTTGCCGCCACCTACTGGTGGTTTGGTTTCATTTTTAAAAGTATCATTTCCCCCCCCCAACATTTCATATTTGTATTTTCAAAAAATATTTAAAACAGTCCCATAACATTAATGCAGTTGTAATCAATCAAAAATATGCAGATTTACATACGTCAAAGCTGCAATATTCTGAAAGGATATTGCTTCAGAACAAATTTATATTTCCTCCACCACCACCACCACAAAAACAAAACAAAAAAAAAAATTTTTTTTTTTCCGGACAAGCAACTGTTTTACTCGTACAAGTGAATGACCGATTTACGCGTGTCCACATGACAAGGCTTAATGTCGAGCCCTGTATGTAATCATTTCATATTGTCTGACAACAAAAACAGAAAAAATATATAGATGAAACAATTTTATTGGGAATTTGGCTGTATTAAAATATATTATGTGAACAAAAGGGTAGCAGCAGAGAAGCAAACAAATGTAAAAGACTGACACTTGGCAGAATGCGAATACAACAATGACATGATGAATTTTCTAATTGCCGTATGTCGTCTATCGACATTTAGCGGCACATATGCCATTAAAAAATTGGCATTAAAAAGCATTAAATTAGATTTGATGAAACCTGTAGAAACCCTGTAGCAGAGATAATATGTGTGTGTATATATCATACATATATACACATACATATACAGTATCCCACAAAAGTGAGTACACCCCTCACATTTCAGCAACCAAGCAACAATTTTTATGTCCTCTAAAAATAACTCAACATACAGCCATTATTGTCTAAATAACTGGCAACAAAAGCGAGTACACCCTAAGTGAACATGTCAAAACTGACCAAAGTGTCAATATTTTGTGTGAGCACTAGCATTGCCTTAATCCTCCTGGGCATGGAATTCACCAGAGCTGCACAGGTTGTTGCTGGGATCCTCTTCCACTCCTCCATAATGATATCACAGAGCTGCTGGATGTTAGACACAAGGCGCTTCTCCGCCTTCCGCTTGAGGATGCCCCACAGGTGCTCAATAGGGTTCAGGTCTGGAGACATACTTGGCCACTCCATCACCTTCACCTTCAGCTTCCTCAGCAAGGCAGTTGTCATCTTGGCGGTGTGTTTGGGGTCATTATGATGTTGGAAAACTGCCGTTCGGCCCAGTTTCTGAAGAGATGGCATCATATTCTGCTTCAGAATGTCACAGTACATGTTGGAATCCATGTTTCCCTCAATGAAGTGCAGTTCCCCAGTCCCAGCAACACTCATGCAGCCTCAGACCATGATGCTACCACCACCATGCTTGACTGTAGGCAAGACACAATTTTCTTGGTACTCCTCACCAGGGTGTCGCCACACATGCTGGACACCATCTGAGTCAAACTAGTTTATCTTAGTCTCATCAGACCACAGGACATGGTTCCAGTAATTCATGCTCTTGGACAGGTTGTCTTCAGCAAACTGTTTGAGGGGTTTCTTGAGAGCCAGCTTCAGAAGAGGCTTCTTTCTGAGATGACAGCCAGGCAAACCGACTTGTTGCAGTGTGCGGCGTATGGTCTGAGCACTGACAAGCTGACCTTCCGCTTCTGCAACCTCTAAAGCAATGCTGGCAGCACTCGTGTGTCTGTTTTTGGAAGCCAGCTTCTGCACCTGATACACAGCACGAGGACTCAACTACTTTGATCGACCCTTGTAAGGCCTATTCCGAGTGGAACCCATCTTGGAAAACCTCTGTATGACCCTGGCCACTGTACTTTAGCTCAGTTTCAGGGTGTTACCGATCTTCTTATAGCCTAGGCCAACTTTGTGGAGAGCAACAATTCTAATTCTCAAATCCTCAGAGTTCTTTGCCATGAGGTACCATGTTGAACATTCAGTGGTCAGTATGAGAGAATTGTACTCAAAGCACCAAATTGTAACTGCTCTAATACAAGATACGCAAATTTGTATTGTCCTATCGAGCAGACAAAAACATGAACATGATGAATAGGACATGTGGCTTTGCATGGTTAAAAGATGTAGAGCTGTTATCACTTAGGGTGATATACAAGCAGTGTAAAATTATTTATATATATATATATATATATATATGTATGTATGTGTATATATATGTATTTCTTACAATTCTGATTTTTTTTTTTTTTTTTCCTCAATTGCGAGTTTATATCTCGCAATTCAATTTAATTTTATTAATATGAAATATAATAAAGGATGTTTTACTTCCTTTTTATTTTTAATGTATTCATATCCTTGAGTTGATCAGCTGATGCTCGCTTTAAGATCTGCATTGGCTGACAGTCATGCGTCTGCTGTTGTGTGGATGTTGTGCTGGTCTCACTGATCTCTCGGTGTCTCAGTTCGCCTGTGATGTTTTACCCAGAGATGCCCAGTCAGGACTTTCAGCTGGCACCAGGACACTTGCTGGAAAACATCAGGCTCTCGAATGAAAACAGATCCATTATAATTGCATAATGGTTTGTTAAAGCCCAAAGACATGGCGTGTGTTTCTGAGGCCTGTGTTGACATTGGAGGTTTATTGTTTTTGTTTCCATCTCATAACTTTGTAGAACTCACTGCTTTTATGCATGTCACACATTATTGCAAAATTGAACGTCTGAAAATAGTTTACGTTTGCAATGGTTTCAATATTTCGTGGTGCCAGTGTCTGAAGGCAAGAATTGAATACTGTTTTTTCTCAGACCTCCCATTGCAACGTGACGAGCAAGAACTGTTTCAACTGAGCAGAGATTAAACTTTGATTATTGTGGGGTTTTTTTGGATACTGTTTATTTATTTGATTTATATTTTGTTTGTGTGTATTATGTTGCTGGCATTTTAATTTTTTGGTTTATAAATACATTTATTTTTATTTTTTTTAATTGTTTATTGTATTTTTTTATATAATTTTTCAACTCATCCATTATTTTATTTTTATCTACACAAATTAAGTCTGGCATCAGTGCAAAAACAGTTTCACATGATACACTTTCAACACGGTTCAAAACAAATTAATCATGCAGCAGATCAACAGAGGCCACATGACCACAGAGGCCAAGCGTGCGGCGAAGATGGAGAAGAAGATGAAGATTCTTTTGGGTGGTTATCAGTCTCGGGCCATGGGTCTGCTCAAACAGCTCAGTGAACTCTGGGATCAGGTAGAACAGGCCAACGTGGAGCTCCACACCTTCCAGGAGCTAAAGAAACAGGAAGACCACGCCATTCCACGCAGACAGGAGGCCCTGAGAGAGGATGTTCAGAGGCAACAGGACAGAGAAAAAGAGCTGCAGCAGAGATTCGCAGACCTGCTCCTGGAGAAACAGACGCTCTCGCAGAAGTTTTGAGTGGGACGTTCATCTTCAACATCTCTGCATCTCCTGTAGTCAGTACAGTAGCTGTGTGTGCTAATCCTAAAGTCTAGCCTTACCATTCCGCTTCAGTGTGCACATCAGCATGTTTTATATCTTTACTGTGTGGATCCTTCTCTTTCTGCTGTAATGAACTGCTTTCAGCTTCTTAATTTTGAGTTTGAGATTCACCTGCTGCTCACAAGGAACACCAGGATTTAATTCACAGATTTGTTTTTAAAAATGTTTTTCATCTTACTTGTGCAAATGCAACCTTGTAAGTGTAAATATCGTCTGTTTTCTGTTATGTTTTTCCCATGTCAAGCCATTTTTAGGTTTGTTCTGAATATAAGAAACTTTTGCTCCTTTTCATGTGTAAATTGGAATGACTGGCATTGAAAATGTACATCATTTACAAAATAAATCATCAGCACTGAGTTGATTCTGGAAC

Function

GO:

id name namespace
GO:1990090 cellular response to nerve growth factor stimulus biological_process

KEGG:

id description
K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504539 lncRNA upstream 23936 1197604 ~ 1198070 (+) True G439541
TU504513 lncRNA upstream 58850 1162939 ~ 1163156 (+) True G439519
TU504511 lncRNA upstream 60425 1161307 ~ 1161581 (+) True CI01000310_01103452_01164843
TU504505 lncRNA upstream 66243 1155294 ~ 1155763 (+) True G439511
TU504500 lncRNA upstream 70986 1150740 ~ 1151020 (+) True G439507
TU504569 lncRNA downstream 21941 1261346 ~ 1261761 (+) True G439565
TU504642 lncRNA downstream 118493 1357898 ~ 1367503 (+) True G439628
TU504645 lncRNA downstream 126226 1365631 ~ 1366429 (+) True G439631
TU504671 lncRNA downstream 168302 1407707 ~ 1410605 (+) True G439657
TU504698 lncRNA downstream 283333 1522738 ~ 1523826 (+) True G439679
CI01000310_01196439_01199290.mRNA mRNA upstream 22629 1195700 ~ 1199377 (+) True CI01000310_01196439_01199290
CI01000310_01103452_01164843.mRNA mRNA upstream 57032 1101877 ~ 1164974 (+) False CI01000310_01103452_01164843
CI01000310_00861939_01046631.mRNA mRNA upstream 175375 861939 ~ 1046631 (+) True CI01000310_00861939_01046631
CI01000310_00784238_00790497.mRNA mRNA upstream 430112 784238 ~ 791894 (+) False CI01000310_00784238_00790497
CI01000310_00744256_00746991.mRNA mRNA upstream 474901 743378 ~ 747105 (+) True CI01000310_00744256_00746991
CI01000310_01257447_01269508.mRNA mRNA downstream 17922 1257327 ~ 1270033 (+) True CI01000310_01257447_01269508
CI01000310_01394296_01394727.mRNA mRNA downstream 153684 1393089 ~ 1394908 (+) True CI01000310_01394296_01394727
CI01000310_01411744_01412226.mRNA mRNA downstream 172339 1411744 ~ 1412467 (+) True CI01000310_01411744_01412226
CI01000310_01414325_01452698.mRNA mRNA downstream 174920 1414325 ~ 1452698 (+) True CI01000310_01414325_01452698
CI01000310_01508712_01511125.mRNA mRNA downstream 269307 1508712 ~ 1511125 (+) False CI01000310_01508712_01511125
TU503984 other upstream 530814 651976 ~ 653337 (+) True G439115
TU503981 other upstream 553954 651976 ~ 653356 (+) False G439115
TU503983 other upstream 553954 651976 ~ 653356 (+) True G439115
TU504002 other upstream 572453 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU504694 other downstream 262481 1501886 ~ 1501950 (+) True G439675
TU504915 other downstream 672196 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1860012 3099417 ~ 3136328 (+) True G440505

Expression Profile