RNA id: CI01000310_01411744_01412226.mRNA



Basic Information


Item Value
RNA id CI01000310_01411744_01412226.mRNA
length 724
RNA type mRNA
GC content 0.41
exon number 1
gene id CI01000310_01411744_01412226
representative True

Chromosome Information


Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1411744 ~ 1412467 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAAGTGGCAAATGCGATTCAGAGCCATTGGATGTTTTATTTCCCTCCTACATCCTCGCTGCGCCGCCACACACAGCTCCCAGCAGCGCCTGCCTGCGTCTGCACAAGACCTGCAATCATGCAAAATCCATTTCTCTCACACCAAAATGTGTAGATTAAAGGCTCTTGGACATGTACTTGGACAGGAAGGAGGAGGAGAAATGGCTCGCACGTTCAAATCTCCATCATCTCTGTGTGTGCAAGTTTCCACAGAGTCAGACTTCATGTCGAGTGCTGACATCACTCTTCCTACGGTCTTTCAAACAGCCAAGGTTTTACAAACAATACACATGGGGGAAAGTCAGGCTAGACACAAGAGTGGGGATGTGATTTTTTCCAGAATAAAACACAGAATTGACTGTGAAGGAAGAACAGAGTATGAAACCTCAACTACCACAGGCTCACAACTGGAGTCTAGAATAAGAAAATGGGATCAGCACTGAGAATTTTCCATCTAATTATAATTTTGCACAAATAATGTGCATATTTAATTAGCATTTCGAGATAAGCAAGCTCATTTTGGCTCAGTATATTCTTTAATGCGTCTGTGAGACTTAAAGATGCTTAAGTAACTTAACATGTCTGATGCTCTGTCAAAAAGCTATTTACTATAAGCATAACTGTAACTGCAACTAACAACTTTTACTAGATTTCAGAGTATCCAAACAGTTAAAACTATATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU504671 lncRNA upstream 1139 1407707 ~ 1410605 (+) True G439657
TU504642 lncRNA upstream 44241 1357898 ~ 1367503 (+) True G439628
TU504645 lncRNA upstream 45315 1365631 ~ 1366429 (+) True G439631
TU504569 lncRNA upstream 149983 1261346 ~ 1261761 (+) True G439565
TU504539 lncRNA upstream 213674 1197604 ~ 1198070 (+) True G439541
TU504698 lncRNA downstream 110271 1522738 ~ 1523826 (+) True G439679
TU504725 lncRNA downstream 149854 1562321 ~ 1562554 (+) True G439704
TU504744 lncRNA downstream 191430 1603897 ~ 1604107 (+) True G439721
TU504746 lncRNA downstream 192384 1604851 ~ 1605069 (+) True G439723
TU504764 lncRNA downstream 238545 1651012 ~ 1651387 (+) True G439741
CI01000310_01394296_01394727.mRNA mRNA upstream 16836 1393089 ~ 1394908 (+) True CI01000310_01394296_01394727
CI01000310_01257447_01269508.mRNA mRNA upstream 141711 1257327 ~ 1270033 (+) True CI01000310_01257447_01269508
CI01000310_01207513_01226750.mRNA mRNA upstream 184572 1207057 ~ 1227172 (+) False CI01000310_01207513_01226750
CI01000310_01196439_01199290.mRNA mRNA upstream 212367 1195700 ~ 1199377 (+) True CI01000310_01196439_01199290
CI01000310_01103452_01164843.mRNA mRNA upstream 246770 1101877 ~ 1164974 (+) False CI01000310_01103452_01164843
CI01000310_01414325_01452698.mRNA mRNA downstream 1858 1414325 ~ 1452698 (+) True CI01000310_01414325_01452698
CI01000310_01508712_01511125.mRNA mRNA downstream 96245 1508712 ~ 1511125 (+) False CI01000310_01508712_01511125
CI01000310_01513690_01517791.mRNA mRNA downstream 101223 1513690 ~ 1518229 (+) True CI01000310_01513690_01517791
CI01000310_01564875_01571307.mRNA mRNA downstream 152408 1564875 ~ 1572028 (+) True CI01000310_01564875_01571307
CI01000310_01588365_01597469.mRNA mRNA downstream 174025 1586492 ~ 1597486 (+) True CI01000310_01588365_01597469
TU504536 other upstream 172339 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 720552 651976 ~ 653337 (+) True G439115
TU503981 other upstream 743692 651976 ~ 653356 (+) False G439115
TU503983 other upstream 743692 651976 ~ 653356 (+) True G439115
TU504002 other upstream 762191 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU504694 other downstream 89419 1501886 ~ 1501950 (+) True G439675
TU504915 other downstream 499134 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1686950 3099417 ~ 3136328 (+) True G440505

Expression Profile