RNA id: TU504694


Basic Information

Item Value
RNA id TU504694
length 65
RNA type TUCP
GC content 0.40
exon number 1
gene id G439675
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1501886 ~ 1501950 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCACGTTCGCGTTTATTTGCAGCAGATGGGGTTTGACTCACTCACTAAATGCGGTTTGGTGAAGATCGTAATCATAATTTCAACAGTCTCAGGACTACATCTCTGCAAACTTCATCTGCAAGTCTTGTTTGGAGAGCTTCTAGAAAGCTGCTAGAGAACATCAACAACACCATTTTTTTTAACATATCGTCTTCAATAATAAATCTTAACTAGTGTGTGTGAAATGAAAGTTCTCTAAAACGAAAGATATTTGCATTTTTGAACATCCATGAAATCTGTGCAGATTTTGGCTTGAAATCTGAAGAGCCGGGACAATTGCTGGAGCCATGCAGGTCTCTTGAACAGTTTCCAACAGTGATCTGCCAACTTATCCCACTTTTCCAGTGAATGATTTTTAGTTTCCCTGGACGTGTGGAGTAAATGTCCCTAAAGCCAATGGCAATGTCACATGCAGCTAAGCCCTTAAAAAGTTCAGAAAGCCTTTCTGCATCACAGGATGACCACCTTTCCAGTTTGAAGGCTTTGACTGAGAAGCTGAAACTGGAGACCAGCAAGCCGTCTTACCTGGACTGGAGAGCCCAGCTGGAGGCGATGCTGGCCCAGAGCCACAGAGTCTCAGATGCGTTAGCCGCACCGGGTGACACGGAGAAGCAAAAAACATCAGGTCCTCTTAAGTGGACGAAGCCGTCACTGGGCGCTGGTGTGATCCATGAAGGGAGGCAACCATCAGTGAACAGACTGGGATTTGGAAGTATAGACAGAGCGTTGGAGTGGCTCAGGAAAGAGCTGAGATGCGTTTACAGGACCAGCAGCTCGCACGTCAGCTAATGCACCTGCGCAGTGACATTAACAAACAGAGAATCGTGCAGACGTGTAACCAACATCGCAAGATGCTGAACGATGCCACATTTGAGCTGGAGGAGCGAGACGATATGTCAGATTTATGTGACGTCCCCATGTCTCCTGGATTAGGCCTCTCCTCGACACTCAAGGTCATCGGGGTCACCAAGATGAACATCAACTCTCGGCGGTTTTCCCTGTGCTAACAGCAGGACACAGAGGACCGTGTTTTTATCTTAAAGGGGTCATGACATGGATTTTTTTTATTATTTTAATATGTTCCTTTTGGTTCACCTATAATGTTATTTATGTTAAATATGCAGAAAAATTATTATTTTCAGCCTTCATCTTCAGCCTCTGTCTGAAAGGCTCCTTTACAGGCCCGTGCACACCAAGAACGATAACTAGAAAGATAACGATAAATATATACTTCTAAAAATCATTCTAAATATAAAAGAATAGCTATAACGATAACGTTATAGAGAAACAATATCGTTGGGATCACTTTCAGAATTATTTTTTTCCAGGCTGTTGAATGATAAAACACTGACACCCAGTCAGAATCCATTATAATTTAAAGGCTCGCGCATGTAAAATAGCAGATGACACTGAGAGAAGTTAATAGCTGAGGTCCAGAAAAAGCCACCACTGTTTGATAAGTCAAACCCTCTTTTCAAGGATACTTTAATGAAAATGGATATATGGGAAACAATCAGTCATACACACGGAATAAATGGTGAGAAGTATTAACGATGAGATCATTATGCCAGTTTAGCAAACAGTGTAACATAAAATTACCTCAGGTGTCCAGCACTAGTTTTGTCAACATTGTCTTGCTTCCTTTAAAGTTGCTGTGGAAAAGATAAGGCTTTGTTTTTATTCCACTATATTGACTTTGTCAGTGAAATTCACTGTTAGATTAGATCAATTACATTATCTATTCACTCGAAACATAGCATGCTGAGGACATCTGCTGGTTAAAGCCATGTAAATGCAACAAGAACAGCAAAAACATGTTGTTCACACTTTGAAACTGCAGCATGTGAGCTTAGAATGAACAGTTATCGTTCGTTGGTGTGAACACAAATACAGTTATTGATATAGTTATCTTTATAGGTATCGTTCTTGGTGTAAACGGGCCTTTAGGCTTGTCAGCAAACTCCAACTGTTATAATTGGCTAACGTCATTGCATAGGAAACAGTATCAACACCCACTCGCTACTGCATGATCTCAGTGAGTGTTTTGAAAACATCCATGTAAACCTGTCATTTACAGACAAAGCATTATGAAATCATTTACTTGCGGTTTCCAATGTAGCTGCTGTCAGATCTAAAACTGCTTCATCTTTCAACAAAAGTTTCTTTGCAAACTCTCCATAATTACACTGTGCCTCATTTACAAAACAGTCTACAGTCAAATGCTCCGCACAAACATATAATTCTCTGATGCATTCTGGGACACCATTAAAAATAAACCATTTAATTGCTCCTGATGCTGGTATCCTTCTGAAGTCTGTACAGAAAAGAGCAAATGAGCTGTTTAAACTGGACTCGTCAAAGCAAACGTTCCTTTACGCTTCAGTTTACTCTTCCATTTGTCCTCTTGTCGGCGGACTCAAGCACGTGGAATACGTCAGAAAGTAAACGGCCGTCTGTATACTGTATCCAGTGTAGACAGCGTCAGTGATTATGTTGGTTTCTGTTTGCTTTTGATGCGATGCGGTGCTCACATCCGGTGTATGTCACGAATGAACGCCAGTGGGCGGGGCCTATGGTGAGATGATGCACCCGAGATGACTAACATGCATTAGTGGTTCGGGACCGCCATTAAAAAAAGAGACACCTAATCATGACTAAATGCCAGTGGGAGGGCCCTATGGTGATGATGCAAAACTATTTGTTGCTGTCTTGCTCTGGAGGTCACATGCAAACATATTTGCCCGTGTGACGTCACAGATCCCACAATATCCAAAAAAGCCATTTTTTGCAGCTTGATTAAATAAATGCTTTGTTTATAATGAGGATGCAGCTATGAAACTTGCAGGATGTTTTAATGGTAAAAAGACCTCTTATATATCAAGAGATCAAAGCAAATTTGGTTTCTCATGTCATGACCCTACAATTGAATGATTGTGAGTGTTTTTATAGATTATAGAGCATTATTAGGATAATGGTATTTTCAAAATGTCTCTGACCTTGTGCTTTCATTGCCTTAAGCAAACATGAAAAGACGTTGATTTCAAGTCGACTTTAATCTTAACAATCATGTGTACAGTCAGTGTAATTTGTGTTTGATATTATGACATACGCCTATCATTTTGGGGGAAAACTGATTTTAAAGCTATACAAAACAGAAAATCATATCAAAATTTAGTGAGTTGATGCTTAAAACAAGAAATATATATATAAAAAACAATTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504671 lncRNA upstream 91281 1407707 ~ 1410605 (+) True G439657
TU504642 lncRNA upstream 134383 1357898 ~ 1367503 (+) True G439628
TU504645 lncRNA upstream 135457 1365631 ~ 1366429 (+) True G439631
TU504569 lncRNA upstream 240125 1261346 ~ 1261761 (+) True G439565
TU504539 lncRNA upstream 303816 1197604 ~ 1198070 (+) True G439541
TU504698 lncRNA downstream 9397 1522738 ~ 1523826 (+) True G439679
TU504725 lncRNA downstream 48980 1562321 ~ 1562554 (+) True G439704
TU504744 lncRNA downstream 90556 1603897 ~ 1604107 (+) True G439721
TU504746 lncRNA downstream 91510 1604851 ~ 1605069 (+) True G439723
TU504764 lncRNA downstream 137671 1651012 ~ 1651387 (+) True G439741
CI01000310_01414325_01452698.mRNA mRNA upstream 49188 1414325 ~ 1452698 (+) True CI01000310_01414325_01452698
CI01000310_01411744_01412226.mRNA mRNA upstream 89419 1411744 ~ 1412467 (+) True CI01000310_01411744_01412226
CI01000310_01394296_01394727.mRNA mRNA upstream 106978 1393089 ~ 1394908 (+) True CI01000310_01394296_01394727
CI01000310_01257447_01269508.mRNA mRNA upstream 231853 1257327 ~ 1270033 (+) True CI01000310_01257447_01269508
CI01000310_01207513_01226750.mRNA mRNA upstream 274714 1207057 ~ 1227172 (+) False CI01000310_01207513_01226750
CI01000310_01513690_01517791.mRNA mRNA downstream 349 1513690 ~ 1518229 (+) True CI01000310_01513690_01517791
CI01000310_01564875_01571307.mRNA mRNA downstream 51534 1564875 ~ 1572028 (+) True CI01000310_01564875_01571307
CI01000310_01588365_01597469.mRNA mRNA downstream 73151 1586492 ~ 1597486 (+) True CI01000310_01588365_01597469
CI01000310_01638700_01644396.mRNA mRNA downstream 125359 1638700 ~ 1644598 (+) True CI01000310_01638700_01644396
CI01000310_01663192_01666886.mRNA mRNA downstream 149851 1663192 ~ 1667160 (+) True CI01000310_01663192_01666886
TU504536 other upstream 262481 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 810694 651976 ~ 653337 (+) True G439115
TU503981 other upstream 833834 651976 ~ 653356 (+) False G439115
TU503983 other upstream 833834 651976 ~ 653356 (+) True G439115
TU504002 other upstream 852333 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU504915 other downstream 398260 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1586076 3099417 ~ 3136328 (+) True G440505

Expression Profile