RNA id: TU504009


Basic Information

Item Value
RNA id TU504009
length 279
lncRNA type read_through
GC content 0.29
exon number 2
gene id G439134
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 715514 ~ 746104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGATCAAAAATACATCAAAAATATTGAAATATTATTGCAATTTAAAATAGCTGTTTTCTATGTGAATATATAGTAAAATGTAATTTATTCTTGTGATCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGCTGCTCAAAAGCACTTTTTTTTATTTTTATGGAAACTGTGATACCTTTCTTTGATGATTAGAAAGTCCAACAATGTAAAAGGTCACTCTGGATCAAATAAACCTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504010 lncRNA upstream 15593 699615 ~ 699921 (+) True G439135
TU503975 lncRNA upstream 104773 610436 ~ 610741 (+) True G439111
TU503917 lncRNA upstream 215396 498773 ~ 500118 (+) True G439072
TU503894 lncRNA upstream 224991 489626 ~ 490523 (+) True G439054
TU503897 lncRNA upstream 273734 440834 ~ 441780 (+) False G439054
TU504013 lncRNA downstream 6166 752270 ~ 752679 (+) True G439138
TU504029 lncRNA downstream 10235 756339 ~ 756796 (+) True G439148
TU504214 lncRNA downstream 45441 791545 ~ 791969 (+) True CI01000310_00784238_00790497
TU504215 lncRNA downstream 46569 792673 ~ 794145 (+) False G439289
TU504217 lncRNA downstream 46569 792673 ~ 794492 (+) True G439289
CI01000310_00691123_00696889.mRNA mRNA upstream 18233 691123 ~ 697281 (+) False CI01000310_00691123_00696889
CI01000310_00653504_00679039.mRNA mRNA upstream 36475 653504 ~ 679039 (+) False CI01000310_00653504_00679039
CI01000310_00648731_00650082.mRNA mRNA upstream 65395 648731 ~ 650119 (+) False CI01000310_00648731_00650082
CI01000310_00629492_00629967.mRNA mRNA upstream 84682 629492 ~ 630832 (+) True CI01000310_00629492_00629967
CI01000310_00513998_00524767.mRNA mRNA upstream 189908 513998 ~ 525606 (+) True CI01000310_00513998_00524767
CI01000310_00784238_00790497.mRNA mRNA downstream 38134 784238 ~ 791894 (+) False CI01000310_00784238_00790497
CI01000310_00861939_01046631.mRNA mRNA downstream 115835 861939 ~ 1046631 (+) True CI01000310_00861939_01046631
CI01000310_01103452_01164843.mRNA mRNA downstream 355773 1101877 ~ 1164974 (+) False CI01000310_01103452_01164843
CI01000310_01196439_01199290.mRNA mRNA downstream 449596 1195700 ~ 1199377 (+) True CI01000310_01196439_01199290
CI01000310_01207513_01226750.mRNA mRNA downstream 460953 1207057 ~ 1227172 (+) False CI01000310_01207513_01226750
TU503984 other upstream 24322 651976 ~ 653337 (+) True G439115
TU503981 other upstream 47462 651976 ~ 653356 (+) False G439115
TU503983 other upstream 47462 651976 ~ 653356 (+) True G439115
TU504002 other upstream 65961 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU504536 other downstream 475902 1222006 ~ 1239405 (+) True G439538
TU504694 other downstream 755782 1501886 ~ 1501950 (+) True G439675
TU504915 other downstream 1165497 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 2353313 3099417 ~ 3136328 (+) True G440505

Expression Profile