RNA id: TU504354


Basic Information

Item Value
RNA id TU504354
length 498
RNA type TUCP
GC content 0.40
exon number 2
gene id G439398
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 939135 ~ 941564 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCTCTAGCGCCACCAGCTGTCCAAATTTGCGCTCATGTTAATGTTAATAACTTTTGAACCGTAAGGGTTAGAAACAAAATTCTTTTTTCCTATGATTCCTTGGGTCAAGACGAATGCACCCTATGACGTCATTTTCCGTCATGAAATTTTTTCCGTAATTTTGAATTTTCTGAAAAACCTACTTTTTCTAACTCCTCCTAGGCCGTTACTCCGATTTTTACGAAAATTGAACCAGATCATCTTCAGACCATGCCGACAAAAAGTTATGGAATTCAAGTTGATTTCTCAAACCGTTTTCGAAAAACACGCAAACGAATTGTACGTAGCGCTTGCGAAAATAGACATAAGGCTGTATCTCTGCAACGCTTTATCGTATTCAGACCAAACTTGGTACATGTTATCACAAGCATGTCCTGAGGCAACATGCAGCGTTTCGGCGCAGCGCCACCTACTGGTCTGGAGATACGAAAAATGGCTATTTTTGCTTATAACTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504282 lncRNA downstream 61094 795226 ~ 878041 (-) True G439328
TU504209 lncRNA downstream 179787 759102 ~ 759348 (-) True G439283
TU504207 lncRNA downstream 180918 758001 ~ 758217 (-) True G439281
TU504205 lncRNA downstream 181953 756957 ~ 757182 (-) True G439279
TU504204 lncRNA downstream 182563 756350 ~ 756572 (-) True G439278
TU504313 lncRNA upstream 6178 947742 ~ 990127 (-) True G439359
TU504374 lncRNA upstream 38770 980334 ~ 1023679 (-) True G439416
TU504424 lncRNA upstream 112882 1054446 ~ 1054781 (-) True G439442
TU504425 lncRNA upstream 113843 1055407 ~ 1055627 (-) True G439443
TU504426 lncRNA upstream 114291 1055855 ~ 1056384 (-) True G439444
CI01000310_00762106_00777075.mRNA mRNA downstream 162060 761839 ~ 777075 (-) True CI01000310_00762106_00777075
CI01000310_00637385_00645599.mRNA mRNA downstream 293536 636985 ~ 645599 (-) True CI01000310_00637385_00645599
CI01000310_00631552_00635392.mRNA mRNA downstream 303743 631284 ~ 635392 (-) True CI01000310_00631552_00635392
CI01000310_00597640_00601450.mRNA mRNA downstream 337560 597505 ~ 601575 (-) True CI01000310_00597640_00601450
CI01000310_00593564_00595487.mRNA mRNA downstream 343198 593526 ~ 595937 (-) True CI01000310_00593564_00595487
CI01000310_01278443_01278823.mRNA mRNA upstream 336385 1277949 ~ 1279008 (-) True CI01000310_01278443_01278823
CI01000310_01288093_01294540.mRNA mRNA upstream 346486 1288050 ~ 1294540 (-) True CI01000310_01288093_01294540
CI01000310_01301239_01302430.mRNA mRNA upstream 358998 1300562 ~ 1302604 (-) True CI01000310_01301239_01302430
CI01000310_01381159_01387513.mRNA mRNA upstream 439317 1380881 ~ 1388410 (-) True CI01000310_01381159_01387513
CI01000310_01481888_01490264.mRNA mRNA upstream 539832 1481396 ~ 1490555 (-) True CI01000310_01481888_01490264
TU503848 other downstream 605081 332255 ~ 334054 (-) True G439012
TU504465 other upstream 172796 1114360 ~ 1114833 (-) False G439473
TU506657 other upstream 1885220 2826784 ~ 2827204 (-) True G441306
TU506672 other upstream 2193068 3134632 ~ 3137071 (-) True CI01000310_03135568_03137756
TU506927 other upstream 2796528 3743815 ~ 3743963 (-) True G441557
TU506987 other upstream 2844331 3785895 ~ 3791370 (-) True G441605

Expression Profile