RNA id: TU504539


Basic Information

Item Value
RNA id TU504539
length 467
lncRNA type intronic
GC content 0.30
exon number 1
gene id G439541
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1197604 ~ 1198070 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAACGTAAAATATTTACGAATCTTATCATGTCTTAAAGATATATGTATAATTTCCCTTTTATCGTTTTGTAGATAAATGTAAGATCCCTAAACCCCACCCCGAACCTAAACCTACCCATTTTATACAGAATGTTAAAAGAATAAAACATAATGGGCAGAAATGTGTAGGAAAATGACAATTTTAGTAAAAATATAACATTAAAACGATATTTTGAGCCACTAATCCTACACCTACCCCTAAACCTACCCATAACCATTTCTTTAAACTACCTACTAATATAAATAAAAGAATGACAGACAAACAAGCGTAATCACAATAATTTATTTATTTATTTATTTTTTTGCGAAAATGTCAAAAGTGGTACCAAAAGTAGTTCAAATGATGATGAGTTCCAGTCACATTCCTCTCTGGCGGTAATAGTTTTTTATAGGGTACAGAGCAGAATTTAACTTATTAATCCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504513 lncRNA upstream 34448 1162939 ~ 1163156 (+) True G439519
TU504511 lncRNA upstream 36023 1161307 ~ 1161581 (+) True CI01000310_01103452_01164843
TU504505 lncRNA upstream 41841 1155294 ~ 1155763 (+) True G439511
TU504500 lncRNA upstream 46584 1150740 ~ 1151020 (+) True G439507
TU504498 lncRNA upstream 48648 1148611 ~ 1148956 (+) True G439505
TU504569 lncRNA downstream 63276 1261346 ~ 1261761 (+) True G439565
TU504642 lncRNA downstream 159828 1357898 ~ 1367503 (+) True G439628
TU504645 lncRNA downstream 167561 1365631 ~ 1366429 (+) True G439631
TU504671 lncRNA downstream 209637 1407707 ~ 1410605 (+) True G439657
TU504698 lncRNA downstream 324668 1522738 ~ 1523826 (+) True G439679
CI01000310_01103452_01164843.mRNA mRNA upstream 32630 1101877 ~ 1164974 (+) False CI01000310_01103452_01164843
CI01000310_00861939_01046631.mRNA mRNA upstream 150973 861939 ~ 1046631 (+) True CI01000310_00861939_01046631
CI01000310_00784238_00790497.mRNA mRNA upstream 405710 784238 ~ 791894 (+) False CI01000310_00784238_00790497
CI01000310_00744256_00746991.mRNA mRNA upstream 450499 743378 ~ 747105 (+) True CI01000310_00744256_00746991
CI01000310_00738120_00739067.mRNA mRNA upstream 457789 737918 ~ 739815 (+) True CI01000310_00738120_00739067
CI01000310_01207513_01226750.mRNA mRNA downstream 8987 1207057 ~ 1227172 (+) False CI01000310_01207513_01226750
CI01000310_01257447_01269508.mRNA mRNA downstream 59257 1257327 ~ 1270033 (+) True CI01000310_01257447_01269508
CI01000310_01394296_01394727.mRNA mRNA downstream 195019 1393089 ~ 1394908 (+) True CI01000310_01394296_01394727
CI01000310_01411744_01412226.mRNA mRNA downstream 213674 1411744 ~ 1412467 (+) True CI01000310_01411744_01412226
CI01000310_01414325_01452698.mRNA mRNA downstream 216255 1414325 ~ 1452698 (+) True CI01000310_01414325_01452698
TU503984 other upstream 506412 651976 ~ 653337 (+) True G439115
TU503981 other upstream 529552 651976 ~ 653356 (+) False G439115
TU503983 other upstream 529552 651976 ~ 653356 (+) True G439115
TU504002 other upstream 548051 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU504536 other downstream 23936 1222006 ~ 1239405 (+) True G439538
TU504694 other downstream 303816 1501886 ~ 1501950 (+) True G439675
TU504915 other downstream 713531 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1901347 3099417 ~ 3136328 (+) True G440505

Expression Profile