RNA id: TU504642


Basic Information

Item Value
RNA id TU504642
length 399
lncRNA type inter_gene
GC content 0.28
exon number 2
gene id G439628
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1357898 ~ 1367503 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCACAATTCTTTCAATAGTAAAGACTTCAACATTGTTACAAAAGTTTTGTCACTTTTGATTAATTTAATGTGCCCTTGATGAATAAAAGTATTAATTTCTTACTGACCCCAGACTTTTGAACAGTAGTTGATCTGCAGTAACAGTAGGTTATTAAAAAGGCAAGTCGCACAATTAACTGCAATTTTCAAATTGATGATTCTTCAAGACAGTCAGACATTTTTTAACCTCTCATATAGTGACTTCAGCTAGTTTTAATACATATTCCTGCTCAAAAGACCAGCATATAAATCTTTTAGCAAAAACAGCATAAGATAAACATCATCTAAGAGTACTATTCAATTATCTAACAGTTCTGTAGCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504569 lncRNA upstream 96137 1261346 ~ 1261761 (+) True G439565
TU504539 lncRNA upstream 159828 1197604 ~ 1198070 (+) True G439541
TU504513 lncRNA upstream 194742 1162939 ~ 1163156 (+) True G439519
TU504511 lncRNA upstream 196317 1161307 ~ 1161581 (+) True CI01000310_01103452_01164843
TU504505 lncRNA upstream 202135 1155294 ~ 1155763 (+) True G439511
TU504671 lncRNA downstream 40204 1407707 ~ 1410605 (+) True G439657
TU504698 lncRNA downstream 155235 1522738 ~ 1523826 (+) True G439679
TU504725 lncRNA downstream 194818 1562321 ~ 1562554 (+) True G439704
TU504744 lncRNA downstream 236394 1603897 ~ 1604107 (+) True G439721
TU504746 lncRNA downstream 237348 1604851 ~ 1605069 (+) True G439723
CI01000310_01257447_01269508.mRNA mRNA upstream 87865 1257327 ~ 1270033 (+) True CI01000310_01257447_01269508
CI01000310_01207513_01226750.mRNA mRNA upstream 130726 1207057 ~ 1227172 (+) False CI01000310_01207513_01226750
CI01000310_01196439_01199290.mRNA mRNA upstream 158521 1195700 ~ 1199377 (+) True CI01000310_01196439_01199290
CI01000310_01103452_01164843.mRNA mRNA upstream 192924 1101877 ~ 1164974 (+) False CI01000310_01103452_01164843
CI01000310_00861939_01046631.mRNA mRNA upstream 311267 861939 ~ 1046631 (+) True CI01000310_00861939_01046631
CI01000310_01394296_01394727.mRNA mRNA downstream 25586 1393089 ~ 1394908 (+) True CI01000310_01394296_01394727
CI01000310_01411744_01412226.mRNA mRNA downstream 44241 1411744 ~ 1412467 (+) True CI01000310_01411744_01412226
CI01000310_01414325_01452698.mRNA mRNA downstream 46822 1414325 ~ 1452698 (+) True CI01000310_01414325_01452698
CI01000310_01508712_01511125.mRNA mRNA downstream 141209 1508712 ~ 1511125 (+) False CI01000310_01508712_01511125
CI01000310_01513690_01517791.mRNA mRNA downstream 146187 1513690 ~ 1518229 (+) True CI01000310_01513690_01517791
TU504536 other upstream 118493 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 666706 651976 ~ 653337 (+) True G439115
TU503981 other upstream 689846 651976 ~ 653356 (+) False G439115
TU503983 other upstream 689846 651976 ~ 653356 (+) True G439115
TU504002 other upstream 708345 648566 ~ 649553 (+) False CI01000310_00648731_00650082
TU504694 other downstream 134383 1501886 ~ 1501950 (+) True G439675
TU504915 other downstream 544098 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1731914 3099417 ~ 3136328 (+) True G440505

Expression Profile