RNA id: TU504744


Basic Information

Item Value
RNA id TU504744
length 211
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G439721
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1603897 ~ 1604107 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAAAAAAAAAATTCATTTTAGACTTCTAATGCGTGACCGGTGTTTTGCTTTGCTTAATCCTCTGTGCTTCCGTGTTCGTCATTACGTCATGCTTCGGGTCAGAGGTCACTCGTCTGCTGCAAATCGCTGTGTATGGCCATCTGCCGGAAGCTAGTTATTATAGTTAATAACGTTTTAATTGTGGATTTTTTTTTTTACCAAAACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU504725 lncRNA upstream 41343 1562321 ~ 1562554 (+) True G439704
TU504698 lncRNA upstream 80071 1522738 ~ 1523826 (+) True G439679
TU504671 lncRNA upstream 193292 1407707 ~ 1410605 (+) True G439657
TU504642 lncRNA upstream 236394 1357898 ~ 1367503 (+) True G439628
TU504645 lncRNA upstream 237468 1365631 ~ 1366429 (+) True G439631
TU504746 lncRNA downstream 744 1604851 ~ 1605069 (+) True G439723
TU504764 lncRNA downstream 46905 1651012 ~ 1651387 (+) True G439741
TU504718 lncRNA downstream 66775 1670882 ~ 1673466 (+) True G439697
TU504797 lncRNA downstream 157285 1761392 ~ 1770560 (+) True G439759
TU504817 lncRNA downstream 170240 1774347 ~ 1778832 (+) True G439776
CI01000310_01588365_01597469.mRNA mRNA upstream 6411 1586492 ~ 1597486 (+) True CI01000310_01588365_01597469
CI01000310_01564875_01571307.mRNA mRNA upstream 31869 1564875 ~ 1572028 (+) True CI01000310_01564875_01571307
CI01000310_01513690_01517791.mRNA mRNA upstream 85668 1513690 ~ 1518229 (+) True CI01000310_01513690_01517791
CI01000310_01508712_01511125.mRNA mRNA upstream 92772 1508712 ~ 1511125 (+) False CI01000310_01508712_01511125
CI01000310_01414325_01452698.mRNA mRNA upstream 151199 1414325 ~ 1452698 (+) True CI01000310_01414325_01452698
CI01000310_01638700_01644396.mRNA mRNA downstream 34593 1638700 ~ 1644598 (+) True CI01000310_01638700_01644396
CI01000310_01663192_01666886.mRNA mRNA downstream 59085 1663192 ~ 1667160 (+) True CI01000310_01663192_01666886
CI01000310_01674884_01675180.mRNA mRNA downstream 70137 1674244 ~ 1675265 (+) True CI01000310_01674884_01675180
CI01000310_01693209_01696414.mRNA mRNA downstream 88622 1692729 ~ 1696871 (+) True CI01000310_01693209_01696414
CI01000310_01723036_01723254.mRNA mRNA downstream 118929 1723036 ~ 1723550 (+) True CI01000310_01723036_01723254
TU504694 other upstream 90556 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 364492 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 912705 651976 ~ 653337 (+) True G439115
TU503981 other upstream 935845 651976 ~ 653356 (+) False G439115
TU504915 other downstream 307494 1911601 ~ 1912417 (+) True G439845
TU505742 other downstream 1495310 3099417 ~ 3136328 (+) True G440505

Expression Profile