RNA id: TCONS_00019908


Basic Information

Item Value
RNA id TCONS_00019908
length 2152
lncRNA type retained_intron
GC content 0.32
exon number 6
gene id XLOC_010003
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29025292 ~ 29030674 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCTGCTCTCTTGCTGAGCGCGTGGTAGCGATTGTTGGTCTTTTcccttctttttattttagtaagCTGTTACGATTTACAGAAGTAAACAGCTAAAATACTCAGAATTAACGAATATTGTCAATGTGCAGTTGGCTGATGTGTTTTACCTTCATATTCGAGTGCAGAGTTTAAGAATTCATGGCAGAAACGGTCCAAGAAAAGAGTACAGGACTAAAGTTCGCTGAGGAGCAGCTTCTACGACACGGATGGGAAAAGGgtaaAGGTCTGGGCAGAGCAGAGAATGGCATTTCAGAGGCGATTAAAGTCAAAGTTAAATGTGATAAAGGAGGGATGGGCCATAAGCAAGGAGAGCAGTTTAGTTTCCACTGGTGGGACCATGTTTTTAACAAAGCCTCGTCTGGTCTGGTAGTGGAATCGGGGCAGAATGGTGTGATGGTGAAGAAATCAGATGACAGCAGTGATGGACTGATCTCCAACAAGAAGCCACGCAAAGCTCAGCAAGCCAAGTCCATGCTCTATGGATGTTTTGTCAAGTCTGCTACGCTACTGTCAGGAGAAGAACAGCCAGAGAAAATCAGTGATGCAGAAGACGACAGCAGCAGCTCTTCTGAAGACGAGGACCAGAAACTCGACCTGTCTACCACTACTAAgCTGTCTGATGCAGATCTGCTGAAAGCTTGTGGAGGACGAACAGCACACAAGTACGTTTACAATATTGTTATCTGCactaatgtaataatatattaattcctaatagttaaaattatataaataatactgtaagaACTCTTAACGTTGATGCATTCCCATCACATTTGAGTTAGACATTTAAGGTttaagggtcacactttacaataaggttcattagttaatgttaattaatgcatttactaacatgaacaaacaatgaacaatacatttactactgtatttgttcatgctagttaacgttagttaatgaaaacagtagttcattattagttcattttaactcatggtgcattaactaatgttaattagtaaatgttcagttatgattaataaatgctgtacaagtgttgttcatgattagttcatgttagtaaacacattaactaatgaaccttattttaaGTGTTACCGGTTTAAGAAGAATCAAGGAAAACATTTCATTGTAATATTAATGATTTTATAGGTTATTCATTTGCAATTAAGACAATACATTAATACACATTTTCAATtagattattttttgtttatgcaaTTGTGTTAGtttgtaaatgttatttgttgcaagttttagttttttagctTTAATATTTAATCAGTATAATAGTGTAAACGCATTTCCAAGgcgatattttaaaaaatgttattattattattatttgaggtTTATTTCAGTTAACTGCAAATCATTTAATATTGCATATTATTAAATCTGCATTTTTAATTTAGCTTAAACCTAAAAGTtgatatatgtatacatatttatttatattgtacttCAGTTAACAGTTGTGTTAGtagttttagtttaaatgtacagtGATAGCCTGTCAGatgttttttcttatttaagTGTATTATATACTCATAGTCAGTATATTTGAcatttgatttagtttttgttGCTTCAGTTTTAGAGTAATTTCATTTTCTCGATTGTGTGTATATatcttttatttacttgtataatttattttagtaTGCAAATGCACAGTGTTTTATCCTTTTTGCAGCTTGGtgtgaatgaataatttattattttattagatatagtTTCACTCTAACAGCACTGTGTGCCAGATATGTTTCTTTTTCATTGGTGTTTTGTATGCTGTTGTTGTAGAATCTATAAATAAGCTTAGATTTATCTTGTATTagattaatagttttattttatttaagatgtacgattttaagtgttttaattaaccctttaactgccccagcaagaaaataaatgtttggattgcatttctaaACTCTTAATGTCggtagttaacacactcaatctattttttttttacacatcccataatttccaAAATATTAACCactaccaaatggttgatttgtcagtttatggtaaaagtactggacttaatacatatactatgagaATATGAAGtgaaaaagcaattaaaaaaaaaaaacaataaaaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041008-158 Predicted to enable nucleic acid binding activity. Orthologous to human GPATCH4 (G-patch domain containing 4).

Ensembl:

ensembl_id ENSDART00000148976

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021954 lncRNA upstream 357968 28660395 ~ 28667333 (+) False XLOC_009994
TCONS_00021955 lncRNA upstream 361441 28660403 ~ 28663860 (+) True XLOC_009994
TCONS_00021953 lncRNA upstream 753906 28270015 ~ 28271395 (+) False XLOC_009987
TCONS_00021952 lncRNA upstream 975273 28049554 ~ 28050028 (+) True XLOC_009986
TCONS_00021720 lncRNA upstream 1151934 27839927 ~ 27873367 (+) True XLOC_009984
TCONS_00021956 lncRNA downstream 182355 29211362 ~ 29227112 (+) False XLOC_010005
TCONS_00019911 lncRNA downstream 183414 29212421 ~ 29227002 (+) False XLOC_010005
TCONS_00021957 lncRNA downstream 183442 29212449 ~ 29227112 (+) False XLOC_010005
TCONS_00021958 lncRNA downstream 183443 29212450 ~ 29223858 (+) False XLOC_010005
TCONS_00021960 lncRNA downstream 183443 29212450 ~ 29227112 (+) False XLOC_010005
TCONS_00019904 mRNA upstream 532 28994709 ~ 29024769 (+) False XLOC_010002
TCONS_00019903 mRNA upstream 33925 28932038 ~ 28991376 (+) True XLOC_010001
TCONS_00019902 mRNA upstream 34789 28908478 ~ 28990512 (+) False XLOC_010001
TCONS_00019901 mRNA upstream 116312 28903774 ~ 28908989 (+) False XLOC_010001
TCONS_00019900 mRNA upstream 138142 28881235 ~ 28887159 (+) True XLOC_010000
TCONS_00019910 mRNA downstream 14806 29043813 ~ 29057849 (+) True XLOC_010004
TCONS_00019913 mRNA downstream 274964 29303971 ~ 29308947 (+) True XLOC_010007
TCONS_00019914 mRNA downstream 347744 29376751 ~ 29384935 (+) False XLOC_010008
TCONS_00019915 mRNA downstream 347787 29376794 ~ 29384930 (+) False XLOC_010008
TCONS_00019916 mRNA downstream 347803 29376810 ~ 29384505 (+) True XLOC_010008
TCONS_00019905 other upstream 6163 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019885 other upstream 637138 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019873 other upstream 1470061 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019869 other upstream 1470199 27543582 ~ 27555102 (+) False XLOC_009979
TCONS_00019867 other upstream 1470252 27543497 ~ 27555049 (+) False XLOC_009979
TCONS_00019912 other downstream 187267 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019938 other downstream 973745 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 1051536 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019951 other downstream 1941494 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019955 other downstream 2605463 31634470 ~ 31634595 (+) True XLOC_010035

Expression Profile

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