RNA id: TU505613


Basic Information

Item Value
RNA id TU505613
length 304
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G440419
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 2632896 ~ 2633199 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCTCAAGCCATCCTAGGTGTTTATGACTATCTTCTTTCAGACGAACACAATCGGAGTTATATCAAAAAATATCCTGGCTCTTCCAAACTTGATAAAGATAGTGAAGGGGGCGTGAGATTTTGAAGCCCAAAAAAGCGCATCAATCCATCATAAATGTAATGTATGCGGATAGAGTGGGTTAATAAATGCCTTCTGAATTGAAGCTATGCAGTTTTTTGTAAGAAAAATATCCATATTTAAAACTTTATTAACTATAACATCTATCTTCCGGCAGACGGCCGTACGCATCTATTTACAGCAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU505555 lncRNA upstream 63745 2568143 ~ 2569151 (+) True CI01000310_02562834_02569144
TU505574 lncRNA upstream 88821 2543873 ~ 2544075 (+) True G440383
TU505569 lncRNA upstream 95126 2537412 ~ 2537770 (+) True G440378
TU505564 lncRNA upstream 101605 2531087 ~ 2531291 (+) True G440373
TU505563 lncRNA upstream 102415 2530218 ~ 2530481 (+) True G440372
TU505614 lncRNA downstream 2001 2635200 ~ 2635461 (+) True G440420
TU505594 lncRNA downstream 19240 2652439 ~ 2653394 (+) True G440401
TU505617 lncRNA downstream 24402 2657601 ~ 2657838 (+) True G440423
TU505627 lncRNA downstream 42101 2675300 ~ 2676499 (+) True G440427
TU505687 lncRNA downstream 193550 2826749 ~ 2827136 (+) True G440472
CI01000310_02572928_02575251.mRNA mRNA upstream 57540 2572928 ~ 2575356 (+) True CI01000310_02572928_02575251
CI01000310_02562834_02569144.mRNA mRNA upstream 63639 2562389 ~ 2569257 (+) False CI01000310_02562834_02569144
CI01000310_02549824_02559417.mRNA mRNA upstream 73405 2549824 ~ 2559491 (+) True CI01000310_02549824_02559417
CI01000310_02482727_02513419.mRNA mRNA upstream 119117 2482069 ~ 2513779 (+) True CI01000310_02482727_02513419
CI01000310_02164574_02165132.mRNA mRNA upstream 467598 2164574 ~ 2165298 (+) True CI01000310_02164574_02165132
CI01000310_02639022_02649415.mRNA mRNA downstream 5823 2639022 ~ 2649666 (+) True CI01000310_02639022_02649415
CI01000310_02658724_02665972.mRNA mRNA downstream 25525 2658724 ~ 2666179 (+) True CI01000310_02658724_02665972
CI01000310_02789811_02790561.mRNA mRNA downstream 156331 2789530 ~ 2791080 (+) True CI01000310_02789811_02790561
CI01000310_02793777_02805490.mRNA mRNA downstream 160578 2793777 ~ 2807092 (+) True CI01000310_02793777_02805490
CI01000310_02810800_02814032.mRNA mRNA downstream 177110 2810309 ~ 2814084 (+) True CI01000310_02810800_02814032
TU504915 other upstream 720479 1911601 ~ 1912417 (+) True G439845
TU504694 other upstream 1119555 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 1393491 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 1941704 651976 ~ 653337 (+) True G439115
TU505742 other downstream 466218 3099417 ~ 3136328 (+) True G440505

Expression Profile