RNA id: TU505617


Basic Information

Item Value
RNA id TU505617
length 238
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G440423
representative True

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 2657601 ~ 2657838 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAACCTCATTATTTTATTTGGTAATTTTCATGTAGATATAAGCAAATCTAAAGCACGTTGCAATATATAACCAAGTTTGTTATGTTTGTTCTCTTAAATATGTGAAAAATAAGAAATCGAGATAAACAATTTCACACCATAAAGAGATACATAGGATTTGAAAGTGCGGTCATTTGGCTATTTGTTTGTTTGTGTCCTTTCATTTAGCTTTTTTTGATAATTACTATATATTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU505594 lncRNA upstream 4207 2652439 ~ 2653394 (+) True G440401
TU505614 lncRNA upstream 22140 2635200 ~ 2635461 (+) True G440420
TU505613 lncRNA upstream 24402 2632896 ~ 2633199 (+) True G440419
TU505555 lncRNA upstream 88450 2568143 ~ 2569151 (+) True CI01000310_02562834_02569144
TU505574 lncRNA upstream 113526 2543873 ~ 2544075 (+) True G440383
TU505627 lncRNA downstream 17462 2675300 ~ 2676499 (+) True G440427
TU505687 lncRNA downstream 168911 2826749 ~ 2827136 (+) True G440472
TU505696 lncRNA downstream 188085 2845923 ~ 2847548 (+) True G440477
TU505702 lncRNA downstream 197158 2854996 ~ 2855588 (+) True G440483
TU505860 lncRNA downstream 391672 3049510 ~ 3049788 (+) True G440623
CI01000310_02639022_02649415.mRNA mRNA upstream 7935 2639022 ~ 2649666 (+) True CI01000310_02639022_02649415
CI01000310_02572928_02575251.mRNA mRNA upstream 82245 2572928 ~ 2575356 (+) True CI01000310_02572928_02575251
CI01000310_02562834_02569144.mRNA mRNA upstream 88344 2562389 ~ 2569257 (+) False CI01000310_02562834_02569144
CI01000310_02549824_02559417.mRNA mRNA upstream 98110 2549824 ~ 2559491 (+) True CI01000310_02549824_02559417
CI01000310_02482727_02513419.mRNA mRNA upstream 143822 2482069 ~ 2513779 (+) True CI01000310_02482727_02513419
CI01000310_02658724_02665972.mRNA mRNA downstream 886 2658724 ~ 2666179 (+) True CI01000310_02658724_02665972
CI01000310_02789811_02790561.mRNA mRNA downstream 131692 2789530 ~ 2791080 (+) True CI01000310_02789811_02790561
CI01000310_02793777_02805490.mRNA mRNA downstream 135939 2793777 ~ 2807092 (+) True CI01000310_02793777_02805490
CI01000310_02810800_02814032.mRNA mRNA downstream 152471 2810309 ~ 2814084 (+) True CI01000310_02810800_02814032
CI01000310_02823791_02825399.mRNA mRNA downstream 164799 2822637 ~ 2825761 (+) True CI01000310_02823791_02825399
TU504915 other upstream 745184 1911601 ~ 1912417 (+) True G439845
TU504694 other upstream 1144260 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 1418196 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 1966409 651976 ~ 653337 (+) True G439115
TU505742 other downstream 441579 3099417 ~ 3136328 (+) True G440505

Expression Profile