RNA id: TU505687



Basic Information


Item Value
RNA id TU505687
length 388
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G440472
representative True

Chromosome Information


Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 2826749 ~ 2827136 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGAATTACTGCAGCAATGCGGCGTGGCATGGAGTCGATCAGTCTGTGGCACTGCTCAGGTGTTATAAGAGCCCAGGTTGCTCTGATAGTGGCCTTCAGCTCTTCTGCATTGTTGGGTCTGGCATATCGCATCTTCCTCTTCACAATACCCCATAGATTTTCTATGGGGTTAAGGTCAGGCGAGTTTGCTGGCCAATTAAGAACAGGGATACCATGGTCCTTAAACCAGGTACTGGTAGCTTTAGCACTGTGTGCAGGTGCCAAGTCCTGTTGGAAAATGAAATCTGCATCTCCATAAAGTTGGTCAGCAGCAGGAAGCATGAAGTGCTCTAAAACTTCCTGGTATACGGCTGCGTTGACCTTGGACCTCAGAAAACACAGTGGACCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU505627 lncRNA upstream 150250 2675300 ~ 2676499 (+) True G440427
TU505617 lncRNA upstream 168911 2657601 ~ 2657838 (+) True G440423
TU505594 lncRNA upstream 173355 2652439 ~ 2653394 (+) True G440401
TU505614 lncRNA upstream 191288 2635200 ~ 2635461 (+) True G440420
TU505613 lncRNA upstream 193550 2632896 ~ 2633199 (+) True G440419
TU505696 lncRNA downstream 18787 2845923 ~ 2847548 (+) True G440477
TU505702 lncRNA downstream 27860 2854996 ~ 2855588 (+) True G440483
TU505860 lncRNA downstream 222374 3049510 ~ 3049788 (+) True G440623
TU505770 lncRNA downstream 268855 3095991 ~ 3098488 (+) True G440533
TU505783 lncRNA downstream 319098 3146234 ~ 3177391 (+) True G440546
CI01000310_02823791_02825399.mRNA mRNA upstream 988 2822637 ~ 2825761 (+) True CI01000310_02823791_02825399
CI01000310_02810800_02814032.mRNA mRNA upstream 12665 2810309 ~ 2814084 (+) True CI01000310_02810800_02814032
CI01000310_02793777_02805490.mRNA mRNA upstream 19657 2793777 ~ 2807092 (+) True CI01000310_02793777_02805490
CI01000310_02789811_02790561.mRNA mRNA upstream 35669 2789530 ~ 2791080 (+) True CI01000310_02789811_02790561
CI01000310_02658724_02665972.mRNA mRNA upstream 160570 2658724 ~ 2666179 (+) True CI01000310_02658724_02665972
CI01000310_02861303_02864477.mRNA mRNA downstream 33439 2860575 ~ 2865057 (+) True CI01000310_02861303_02864477
CI01000310_02876181_02939106.mRNA mRNA downstream 49045 2876181 ~ 2939106 (+) True CI01000310_02876181_02939106
CI01000310_03054431_03066827.mRNA mRNA downstream 227295 3054431 ~ 3067384 (+) True CI01000310_03054431_03066827
CI01000310_03069663_03095555.mRNA mRNA downstream 242399 3069535 ~ 3095888 (+) True CI01000310_03069663_03095555
CI01000310_03165171_03170431.mRNA mRNA downstream 337801 3164937 ~ 3170431 (+) True CI01000310_03165171_03170431
TU504915 other upstream 914332 1911601 ~ 1912417 (+) True G439845
TU504694 other upstream 1313408 1501886 ~ 1501950 (+) True G439675
TU504536 other upstream 1587344 1222006 ~ 1239405 (+) True G439538
TU503984 other upstream 2135557 651976 ~ 653337 (+) True G439115
TU505742 other downstream 272281 3099417 ~ 3136328 (+) True G440505

Expression Profile