RNA id: TCONS_00021724


Basic Information

Item Value
RNA id TCONS_00021724
length 902
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_010018
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 29721627 ~ 29813252 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gTTGTAGTCTCCATTTCAAATTGGATGACtataaagaaaatgttttagGCAATATGGAGACTATAAAACTGTCTGAATTTGTAATTTTGTCAGGTAATTTGGAAGACGAGGAATATGAAGAACCCTCTGCCAAACCtcctgaagtaaaacgctgtcaTCTACAGAATCCCCACCTCGATGTCTGTGTTGTAAAACTGTCGGCCCACCTGAGAGAGCTGCCCTACAGAGAAACCACAACACGCGCTGCTTGAATTTTAAACAGGTTATGGCTGCAAATGCTCTGCTTTTATAGCGTAAGATCCAGTCAAACATCATTGGGCCATATGTGATTGTGAACTTGAATTTGAGATAATTATTTGATCTCTCATTTCTCTCAAGAAATCTATAATGCGAACAGAAAGCATGTGTGCAAAGGTGTTGTTCTTATTCTGTAAATTTAGTAACTGTTCAAATagtttaaagtccccatgaaccggaagctgcgaaACTGCACTgaagtgtagttcagttttaagAGTTTAAGTTCAGATCAGTTCAGTAAGGTTAATAGAGTCcaaacaatgaagagcaaatccatcgatgcgcagctctacagatcctgaaccatgtaAGCCAGTGTTGACAGCAGctaggaaaaaaaatcacaaattggcgaaagtgaagaattaaaaaacctcaagagaaacaaggctcagttgggcacgaccatttctcctatggccaaacgtcttgtgcagagctgcagtctaggcaccagaggctggagaatgctaAACCTCatcgaagacttgtctgtccctggagcgtcacaagaaccagtctcatgctctccactcctccaagaccaccactgcagctgctcaggatacggcctggtccaggattatggaaaacTTGGGATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021963 lncRNA upstream 129315 29591119 ~ 29600668 (+) True XLOC_010014
TCONS_00019922 lncRNA upstream 212445 29514496 ~ 29517538 (+) False XLOC_010011
TCONS_00019920 lncRNA upstream 217578 29509138 ~ 29512405 (+) True XLOC_010010
TCONS_00021962 lncRNA upstream 479135 29245880 ~ 29250848 (+) True XLOC_010006
TCONS_00021961 lncRNA upstream 499136 29212450 ~ 29230847 (+) False XLOC_010005
TCONS_00019936 lncRNA downstream 165216 29903644 ~ 29908970 (+) True XLOC_010019
TCONS_00021964 lncRNA downstream 264324 30002752 ~ 30039724 (+) False XLOC_010020
TCONS_00021965 lncRNA downstream 264324 30002752 ~ 30117984 (+) False XLOC_010020
TCONS_00021966 lncRNA downstream 591435 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021967 lncRNA downstream 591852 30330280 ~ 30330881 (+) True XLOC_010024
TCONS_00019935 mRNA upstream 33194 29690708 ~ 29696789 (+) True XLOC_010017
TCONS_00019934 mRNA upstream 45125 29663809 ~ 29684858 (+) True XLOC_010016
TCONS_00019933 mRNA upstream 45790 29650698 ~ 29684193 (+) False XLOC_010016
TCONS_00019929 mRNA upstream 82245 29630965 ~ 29647738 (+) False XLOC_010015
TCONS_00019937 mRNA downstream 264177 30002605 ~ 30271444 (+) False XLOC_010020
TCONS_00019940 mRNA downstream 379370 30117798 ~ 30245831 (+) False XLOC_010020
TCONS_00019941 mRNA downstream 379443 30117871 ~ 30267666 (+) True XLOC_010020
TCONS_00019942 mRNA downstream 563111 30301539 ~ 30306358 (+) True XLOC_010022
TCONS_00019943 mRNA downstream 577749 30316177 ~ 30326055 (+) True XLOC_010023
TCONS_00019912 other upstream 513623 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 710845 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019885 other upstream 1341820 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019873 other upstream 2174743 27549842 ~ 27555240 (+) False XLOC_009979
TCONS_00019870 other upstream 2179627 27543588 ~ 27550356 (+) False XLOC_009979
TCONS_00019938 other downstream 264324 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019939 other downstream 342115 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019951 other downstream 1232073 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019955 other downstream 1896042 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 2090610 31829038 ~ 31836487 (+) True XLOC_010037

Expression Profile

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