RNA id: TCONS_00021967


Basic Information

Item Value
RNA id TCONS_00021967
length 528
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id XLOC_010024
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30329863 ~ 30330881 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttatggtccaggatcaacattagtcaatttatACAGTtagtggtccaggatcaacattagtcaatttaaaaagttgatggtccaggatcaacattagtcaatttatACAGTtagtggtccaggatcaacattagtcaatttaaaaagttgatggtccaggatcaacattagtcaatttataaagttgatggtccaggatcaacattagtcaatTTAAAAGTTGGTGGTAtaggatcaacattagtcaatttaaaaagtttatggtccaggatcaacattagtcaatttaaaaagttgatggtccaggatcaacattagttaatttaaaagttggtggtccaggatcaacattagtcaatttataaagttgatggtccaggatcaacattagtcaatttataaagttgatggtcctggatcaacattagtcaatttataaagttgatggtccaggatcaacattagttaatttcaaagttgatggtccaggatcaacattagtcaaGTTCaaagttgatggtccagg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021965 lncRNA upstream 212296 30002752 ~ 30117984 (+) False XLOC_010020
TCONS_00021964 lncRNA upstream 290556 30002752 ~ 30039724 (+) False XLOC_010020
TCONS_00019936 lncRNA upstream 421310 29903644 ~ 29908970 (+) True XLOC_010019
TCONS_00021723 lncRNA upstream 517028 29721663 ~ 29813252 (+) False XLOC_010018
TCONS_00021968 lncRNA downstream 760117 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021725 lncRNA downstream 790875 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021726 lncRNA downstream 790875 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021969 lncRNA downstream 1630027 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA downstream 1630035 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00019943 mRNA upstream 4225 30316177 ~ 30326055 (+) True XLOC_010023
TCONS_00019942 mRNA upstream 23922 30301539 ~ 30306358 (+) True XLOC_010022
TCONS_00019937 mRNA upstream 58836 30002605 ~ 30271444 (+) False XLOC_010020
TCONS_00019944 mRNA downstream 107160 30438041 ~ 30519254 (+) False XLOC_010025
TCONS_00019945 mRNA downstream 152162 30483043 ~ 30520157 (+) True XLOC_010025
TCONS_00019946 mRNA downstream 245020 30575901 ~ 30577136 (+) True XLOC_010026
TCONS_00019947 mRNA downstream 273506 30604387 ~ 30612730 (+) True XLOC_010027
TCONS_00019948 mRNA downstream 602163 30933044 ~ 31006689 (+) False XLOC_010028
TCONS_00019939 other upstream 249619 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019938 other upstream 293587 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019912 other upstream 1113920 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 1311142 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019885 other upstream 1942117 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019951 other downstream 639620 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019955 other downstream 1303589 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 1498157 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019968 other downstream 1591906 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019985 other downstream 1861316 32192197 ~ 32196767 (+) True XLOC_010050

Expression Profile

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