RNA id: TCONS_00019944


Basic Information

Item Value
RNA id TCONS_00019944
length 4163
RNA type mRNA
GC content 0.49
exon number 24
gene id XLOC_010025
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 30438041 ~ 30520157 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATTGGATAGAGATACAGCGATTGGTTACGCGCATAGCGGTCACAGCGATCACTTTGGAAGCAAGTCAAGTCTTCGAAAATTATTTACCGGTTTATAGTGTAAAGAAGGAGACACATCTGCTGTAAGAGTATCTTCGTTGTTCTCCAAAGGCAGCACAGCAGACCTTTGCTTAGTTGAGTCCAATGCCACTTCATCAGTAAGGATGAAGACGGCGGAGATCTGTGTGGTCCTGTTTGTCTTGGGCTGTGTGTGTGAACTGTCATTGTCTTTGGACCCCCGAGATCCAAATGTGTGCAGTTTATGGGAAAGTTTCACCACTTCAGTGAAGGAATCATACGCTCAGCCTTTCGACCAAATGTCTGAAGAGCCCTGCTCTGAACCCTGGAGCGCTAACAAATGCACCCGGCACAGGATCACTTATAAAACGCTTTATAGGCAGGTGGTGAAAATGGACTATCGTAGGAGGTATCAGTGCTGTCCTGGCTTTTACGAGAGCAGGAATAAATGCGTCCcacGTTGCACTAAGGAGTGTGTCCATGGCCGCTGTGTAGCACCTGATCGCTGCCAGTGTGAGATGGGCTGGCGTGGAGACGACTGTTCCAGCTcaTGTGATGGTCAGCATTGGGGTCCAGGCTGCCGGCGTCTCTGCGAGTGCCAGAATGGAGGAGAGTGTGACGTTCTCACAGGAAACTGTCAGTGTCCAGCAGGATACACTGGTCAACACTGCCACGACCCCTGTCCAGTGAAGTGGTTTGGTCAGGGCTGTCGGCAAGAGTGTCAGTGTGGAACTGGAGGAATCTGCAATCAGACCACTGGAGAGTGTGTGTGCAAACAGGGCTTTACTGGAACTCTCTGTGAGGAGTCATGTCCGAGGCCAAAACGCTGTGCTGCACGCTGCCCGTGTCAGAACGGAGGAATCTGCCAGGGCAATGGGGTGTGTTTGTGTCCACCCGGCTGGATGGGTCCAGTTTGTACTGAACGGTGTCCACCAGGCCGTTTTGGTATAAACTGCTCTAAAGATTGTTTGTGCCATAACGGAGGTCACTGTGATCAAGAAAAGGGCCAGTGTCAGTGTGATGCAGGCTACACCGGAGAAAGGTGTAACGAGGAGTGTCCAGTGGGCACATATGGTGAGGACTGTAAGGGAGTATGTGACTGTGCGAACGGAGCCCGTTGTTATAACATCCACGGCGGCTGTCTGTGTGAGCCGGGGTTCAAAGGTCCTCGCTGTGACCACCGCATGTGTCCTGAAGCGGTctttggcatgcactgtcaacACCGCTGCCTCTGCAACCCACTAAACACCCTCAGCTGTCACCCTCTGAAGGGCGAGTGCACCTGTCAGCCAGGCTGGGCTGGTCTGTACTGTAATGAAACCTGTGCTCAGGGTTATTATGGTAATGGCTGCCTGGAGCCCTGCCTGTGTGTGAATGGAGGAGTGTGTGACTCAGTGACTGGCCAGTGCCACTGTCCACCCGGATTTACGgggctGCACTGTGAGAAGCTCTGTGAGGATGGTTTCTACGGAAAGGGCTGCTTGTCTGCTTGTAAATGTGTTAACTCTATAGTCTGTTCTCCTGTGGATGGAGCGTGTATCTGTAAGGAAGgATGGAGAGGACCTGACTGTTCAATCGCATGTTCAGAGGGCACATGGGGTCCTGGCTGTAACCGAACTTGCAAGTGTACAAATGGAGCGTCTTGCGACCCTGCTGATGGGTCGTGCAAGTGCACCGCAGGGTGGAGAGGAGCATCCTGTGACGAGCCCTGTCTAATCGGGACTTTTGGACCAGGCTGTCAAAACCAATGTGACTGTGTGCATGATGAGGGATGTGAGAGTGTTACAGGACAGTGTCTGTGTTTACCAGGCTGGACAGGTGTGCGCTGTACACAGCAGTGTCCAGAAGGAACATGGGGAATTCAGTGCAACCAGACCTGCTCCTGCCTCAACAGCGCCACCTGTCAGGCACATACAGGAACCTGCTTGTGCAAACCGGGATTTTGGGGAGCTCAGTGTCAACACATGTGTAGTGCTGGTCTGTTTGGAGAAAAGTGCAGTCGTCATTGCCCACCATGTGTCCACGCCTCCTCCTGCCATCACATTACAGGAGATTGTCAGTGTTTGTCTGGATATACTGGACCATTGTGTGAACAAGCTTGTCCCGTTGGTCGATACGGAAGCCATTGTAGCAATGTGTGCAGGTGCACCAATAATGCAACATGTCATCACGAGGTTGGTTTGTGCATCTGTCCTGCTGGATGGACTGGATCAGACTGCTCTTTATTGTGTCAAGCTGGGACGTTCGGCATTAACTGTGCCCAGACTTGCTCGTGTCCCCCAAACCATTCCTGTGACCCACACAATGGAGACTGTGTGTGTGAACCTGGACCAGGAGAGGCCTGTAAACCAGAGCAGGAGTTGAGTGTGATGGTGCCCGTGTCTCCGGTGGAGAGGGACTCGTGGGGTGCGATCGCAGGCATTGTGGTGCTGGTGATTCTGGTTGTGCTGCTGCTGGCCGTTCTGCTGTTGTATCGGCGCAGACAGCAGGACAAACAGAGCAACACACCCGTCGTCTCTTTCTCTTCTACACGCACCGTCAGTTCCGAGTATGCCGTGCCTGATGTTCCGCATAGCTACCATCACTATTACTCAAACCCGAGTTACCACACACTGTCTCAGAACAGACCTCCACTGCCACACCTGCCCAACAACCAGGATCGAGCCATCAAGAACACCAATAACCAGCTGTTCTGCAGTCTGAAGAACATGGAGCGGGAGAGGAGAGGTCTGTTTACAGCTGATACTAATGCAACACTTCCTCCAGGCTGGAAACACCAGGAGCCGCCGAAAGATCCAGGGGCTTTTGGGATCGATCGGAGTTACAGCTACAGCGCGACTCTTGGGAAGCACTACAACAAAGAGTTGAAGGATTCCTGTGTggcagtgagcagcagttctctGAACAGTGAAAACCCCTACGCCACCATTAAAGATCTGCCCGGCCTGCCGGTGTGTCCTCCTGAGAGCAGCTACATGGAGATGAAGTCAGCAGTGCCACGTCAAAGATCCTACACTCAAATAATCAGCCCACCCCTCATGACTGCCCCCGCTCTGCCCTGCACAGGACACTGTTCCCTTAGCAATGCTGAAGAACAGGAACTTCAGAATCACTATGATCTGCCCATCAACAGCCACATTCCTGGGCATTATGACTTGCCCCCGGTGCGCAGACCACCTTCACCATCGCCACGCAGACTGCCAAACTGATCCTTTTCTCTCCAAACCCAAAGACTCTTCTCTAAAATCACTGCCAAAGACTGAGAGAAAATAAATGGAGAAGGAAATGCTATCCACAGAAGATTGGATAGAAAACTGCGCAACACTGCCCTCTACTGGACTACAACCGTTGATTGTTCATGAAGAAAAAGTTTCTCCTGCACAGAAATTTAACCCATTTAAGCCTGTGGAAAGCAATTATTGCCAAAAGCTTTATGACTTTTTTCCATCAAACAATATTTTCCAGTGCATTAAGTTCTGGTATTAAAATAGACTTGCTGGATTTAATGTGGTGACCTATGAGCGTTTCCGTACAAAGTTATGTGTCCATCTTTAAAGTGAATGTTTTTTAAATCTTATGTGAGATCCACATGTACGCTCATATAAAAAGATGGGCAAGTTTTTAATAACTATCTGGGCATTAATGGGTTAAATtccacatatttttttatatttttaatgctaATCATGTAATCCGGTAATCAGGGTGTAAATAACAGTTTCATTTTAAACAGCCACTGTAAATGAGTTCGTAAGATACAACATTTTGCTATGAATGTCAAGCTTAAGAGCTGTAAATAGTGTACATAAAAGTTTTTTTCATGCACAACTTGTCGTAAATTCATTTGTTTACAAAGTGAAAGAAACTAATCGTTTTTTTAAACACCTTGTCGCGAGCTCTGTTTACTAAGCGAAataatttatctttttatttactcacctttatgTCGTCTCGTGTACTTTTTTGGAAAGAGAAACGCTGTGGTATTTTGTTTGACAAAGTCAAGTGATTTCGGTAAAAGCAACCTTTTCACATAAAAGCTTCGAAAGACGCATTTGGGTTGACTGAGATCGCCCTCCAGCGGCAAAACCTTTGAACTACctcc

Function

GO:

id name namespace
GO:0043277 apoptotic cell clearance biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-091230-1 Predicted to be involved in apoptotic cell clearance. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PEAR1 (platelet endothelial aggregation receptor 1).

Ensembl:

ensembl_id ENSDART00000137977

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021966 lncRNA upstream 107160 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021967 lncRNA upstream 107160 30330280 ~ 30330881 (+) True XLOC_010024
TCONS_00021965 lncRNA upstream 320057 30002752 ~ 30117984 (+) False XLOC_010020
TCONS_00021964 lncRNA upstream 398317 30002752 ~ 30039724 (+) False XLOC_010020
TCONS_00019936 lncRNA upstream 529071 29903644 ~ 29908970 (+) True XLOC_010019
TCONS_00021968 lncRNA downstream 571744 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021725 lncRNA downstream 602502 31121756 ~ 31128084 (+) False XLOC_010031
TCONS_00021726 lncRNA downstream 602502 31121756 ~ 31135431 (+) True XLOC_010031
TCONS_00021969 lncRNA downstream 1441654 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA downstream 1441662 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00019943 mRNA upstream 111986 30316177 ~ 30326055 (+) True XLOC_010023
TCONS_00019942 mRNA upstream 131683 30301539 ~ 30306358 (+) True XLOC_010022
TCONS_00019937 mRNA upstream 166597 30002605 ~ 30271444 (+) False XLOC_010020
TCONS_00019941 mRNA upstream 170375 30117871 ~ 30267666 (+) True XLOC_010020
TCONS_00019940 mRNA upstream 192210 30117798 ~ 30245831 (+) False XLOC_010020
TCONS_00019946 mRNA downstream 56647 30575901 ~ 30577136 (+) True XLOC_010026
TCONS_00019947 mRNA downstream 85133 30604387 ~ 30612730 (+) True XLOC_010027
TCONS_00019948 mRNA downstream 413790 30933044 ~ 31006689 (+) False XLOC_010028
TCONS_00019949 mRNA downstream 440169 30959423 ~ 30966580 (+) False XLOC_010028
TCONS_00019950 mRNA downstream 442568 30961822 ~ 30966364 (+) True XLOC_010028
TCONS_00019939 other upstream 357380 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019938 other upstream 401348 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019912 other upstream 1221681 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 1418903 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019885 other upstream 2049878 28388046 ~ 28388163 (+) True XLOC_009989
TCONS_00019951 other downstream 451247 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019955 other downstream 1115216 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 1309784 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019968 other downstream 1403533 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019985 other downstream 1672943 32192197 ~ 32196767 (+) True XLOC_010050

Expression Profile

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