RNA id: TCONS_00021725


Basic Information

Item Value
RNA id TCONS_00021725
length 470
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_010031
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 31121756 ~ 31135431 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCAGTCTGAAGTGTTTGGTTCAGTGATTCAACAGATTTATAGGATGTATGTTTTGTCCATTTTTTGTTTGAGTCTATCATCTGTTTACTTCATGTACTGATATCTCTGTCCTGCTCTGCCTTTTTTTTTCCCACACCAGTGACCAGACTCCAACGGAGCGAAGCACAGACTCCACTCATCTCTCACTGGGACAAATAAACTACAGAGAGAAACCCACAAAGCACTGCAGAAAAACACCCAAGAGAAAACAGCCTTCACGTTCCAGCGCCCGCAGCACTAAAGGTCTTTGTTTTACAGCGATTTCTCAGTGCTCGGCTCTCGAGGGAGAGGAATTGATCAGCCTCTCTGCACGGAGATATTGTCGAACTGACAGGAAGGCCTGTCTCACAGCTGGCCCGACAAAAGCAGAGACAGTGTGTGAGAGAACACAGCTGTGTGCAGAGATGCATTCCTGCCTAATTAAAACAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021968 lncRNA upstream 27176 31090998 ~ 31094580 (+) True XLOC_010030
TCONS_00021966 lncRNA upstream 790875 30329863 ~ 30330881 (+) False XLOC_010024
TCONS_00021967 lncRNA upstream 790875 30330280 ~ 30330881 (+) True XLOC_010024
TCONS_00021965 lncRNA upstream 1003772 30002752 ~ 30117984 (+) False XLOC_010020
TCONS_00021964 lncRNA upstream 1082032 30002752 ~ 30039724 (+) False XLOC_010020
TCONS_00021969 lncRNA downstream 832824 31960908 ~ 31985059 (+) False XLOC_010041
TCONS_00019972 lncRNA downstream 832832 31960916 ~ 31970381 (+) True XLOC_010041
TCONS_00021970 lncRNA downstream 964628 32092712 ~ 32095588 (+) False XLOC_010047
TCONS_00019987 lncRNA downstream 1139035 32267119 ~ 32270270 (+) True XLOC_010051
TCONS_00021971 lncRNA downstream 1150915 32278999 ~ 32314568 (+) False XLOC_010052
TCONS_00019948 mRNA upstream 115067 30933044 ~ 31006689 (+) False XLOC_010028
TCONS_00019949 mRNA upstream 155176 30959423 ~ 30966580 (+) False XLOC_010028
TCONS_00019950 mRNA upstream 155392 30961822 ~ 30966364 (+) True XLOC_010028
TCONS_00019947 mRNA upstream 509026 30604387 ~ 30612730 (+) True XLOC_010027
TCONS_00019946 mRNA upstream 544620 30575901 ~ 30577136 (+) True XLOC_010026
TCONS_00019952 mRNA downstream 268563 31396647 ~ 31402154 (+) True XLOC_010032
TCONS_00019953 mRNA downstream 383655 31511739 ~ 31517227 (+) True XLOC_010033
TCONS_00019954 mRNA downstream 414561 31542645 ~ 31547800 (+) True XLOC_010034
TCONS_00019956 mRNA downstream 674119 31802203 ~ 31813015 (+) False XLOC_010036
TCONS_00019957 mRNA downstream 674119 31802203 ~ 31813018 (+) False XLOC_010036
TCONS_00019951 other upstream 150599 30970501 ~ 30971157 (+) True XLOC_010029
TCONS_00019939 other upstream 1041095 30080543 ~ 30080661 (+) True XLOC_010021
TCONS_00019938 other upstream 1085063 30002752 ~ 30036693 (+) False XLOC_010020
TCONS_00019912 other upstream 1905396 29216274 ~ 29216360 (+) True XLOC_010005
TCONS_00019905 other upstream 2102618 29016936 ~ 29019138 (+) True XLOC_010002
TCONS_00019955 other downstream 506386 31634470 ~ 31634595 (+) True XLOC_010035
TCONS_00019961 other downstream 700954 31829038 ~ 31836487 (+) True XLOC_010037
TCONS_00019968 other downstream 794703 31922787 ~ 31923924 (+) True XLOC_010039
TCONS_00019985 other downstream 1064113 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00019992 other downstream 1544736 32672820 ~ 32672936 (+) True XLOC_010055

Expression Profile

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