RNA id: TU519028


Basic Information

Item Value
RNA id TU519028
length 199
RNA type TUCP
GC content 0.46
exon number 1
gene id G452048
representative True

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3403855 ~ 3404053 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTAACAGACCACAAGAACCACAACACTGTTTCTTTAGAAGAGGAGAGTGAAGAGAAGAAGAATCAACTGATGAAGACACAGAAAGACACACAGCAGATGATCCAGGACAGAATCAAGAAGATTCAAGATGTCAAACACTCAGCAGAAGTCAGAAAAAGAAACACAGAGAAGGAGAAAGCAGCCCGTGTCGAGCTCTTCACTGATCTCATCCACTCCATTGAGAGATGTCAGACTGAACTGCTGGAGATGATGGAGGAGCAGCAGAAAGCAGCAGAGAAACAGGAAGAAGAGCTCATTGAAGAGCTGGAGCAGGAGATCACTGAGCTAAAGATGAGAAACACTGAGCTGGAGCAGC

Function

GO:

id name namespace
GO:0030218 erythrocyte differentiation biological_process

KEGG:

id description
K12015 TRIM39; tripartite motif-containing protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU519024 lncRNA upstream 5415 3396822 ~ 3397035 (+) True G452044
TU518692 lncRNA upstream 25744 3376429 ~ 3376706 (+) True G451741
TU518590 lncRNA upstream 26683 3350739 ~ 3375767 (+) False G451666
TU518591 lncRNA upstream 47266 3350739 ~ 3355184 (+) True G451666
TU518583 lncRNA upstream 73438 3294651 ~ 3329012 (+) True G451663
TU519034 lncRNA downstream 144 3404197 ~ 3406068 (+) False CI01000319_03402932_03447997
TU519031 lncRNA downstream 59443 3463496 ~ 3464355 (+) True G452051
TU519033 lncRNA downstream 101691 3505744 ~ 3506186 (+) True G452053
TU519039 lncRNA downstream 128772 3532825 ~ 3549042 (+) False CI01000319_03529404_03549529
TU519025 lncRNA downstream 132497 3536550 ~ 3539369 (+) True G452045
CI01000319_03394244_03396334.mRNA mRNA upstream 5960 3394244 ~ 3396490 (+) False CI01000319_03394244_03396334
CI01000319_03389749_03391750.mRNA mRNA upstream 10459 3389749 ~ 3391991 (+) True CI01000319_03389749_03391750
CI01000319_03307678_03308097.mRNA mRNA upstream 93987 3306484 ~ 3308463 (+) True CI01000319_03307678_03308097
CI01000319_03295425_03299640.mRNA mRNA upstream 101774 3295425 ~ 3300676 (+) True CI01000319_03295425_03299640
CI01000319_03283470_03293866.mRNA mRNA upstream 108524 3283431 ~ 3293926 (+) True CI01000319_03283470_03293866
CI01000319_03483504_03487172.mRNA mRNA downstream 76930 3480983 ~ 3488654 (+) True CI01000319_03483504_03487172
CI01000319_03500024_03502600.mRNA mRNA downstream 95219 3499272 ~ 3502830 (+) False CI01000319_03500024_03502600
CI01000319_03529404_03549529.mRNA mRNA downstream 124027 3528080 ~ 3549725 (+) False CI01000319_03529404_03549529
CI01000319_03582485_03652347.mRNA mRNA downstream 178432 3582485 ~ 3652447 (+) True CI01000319_03582485_03652347
CI01000319_03786208_03790365.mRNA mRNA downstream 382155 3786208 ~ 3791000 (+) True CI01000319_03786208_03790365
TU518579 other upstream 67626 3333281 ~ 3334824 (+) True G451662
TU518612 other upstream 173119 3216340 ~ 3229331 (+) True G451677
TU518373 other upstream 563501 2838086 ~ 2838949 (+) True G451500
TU518358 other upstream 657927 2742741 ~ 2744523 (+) True G451485
TU518223 other upstream 920029 2481064 ~ 2482421 (+) True G451367
TU519020 other downstream 10128 3414181 ~ 3420600 (+) True G452040
TU519023 other downstream 95273 3500279 ~ 3500512 (+) True G452043
TU519272 other downstream 1127566 4531619 ~ 4533094 (+) True G452260
TU519378 other downstream 1382987 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519577 other downstream 1935469 5339522 ~ 5346994 (+) False G452541

Expression Profile