RNA id: TCONS_00020033


Basic Information

Item Value
RNA id TCONS_00020033
length 5214
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_010082
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 34478997 ~ 34502203 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGTTGAGTCGAGTGGTCTGTTTGGTTTGTGCTTGTGAAAGACGCGCCTCGAGCCACGGCCGAACCATCAGGATGGGTCAAGCATGAAAATAGATGACAGAAGTGGAGCCGGTGTTGGATTTCGCCTCATCGGGACGCTCTGGTCGTCGTAATGCACTGCCGGATATCCTGGGCTCTCCTGTTGGAGTCCCACCTGACCTGCCGCTAAAACTGGCAGAACTGTCCCTCACAGATGGTCCAGGTGATGCTCAGTCCCCGTCTGCAGAGGAGGCCCCGACTCCCACAGAGAGCCCAGAGGTGAAGGAGGGCTCCTAGGTGTCCAAACTAATGCCTGTACCACAGAGATGGGGCTCAATCGGCCCTGCCTTTCCCCTGGAGCTCATCCTCTACCGACTGTTCCTGATGCCTGTCAGACTGCATTAAAGGACGCAACCGAGGGCAGCTAAATGTGAGATGAAGGACAAGGTCTTCAAAGGGTTCGTGCAATGAAAAAATAATAGAATGTCCAAAAAAACTGAAGGCAGAATATTGCAAGAGGATGAGCAAGAGCAATCCTCCTTCTTTttaaaacacaagccaaaacgcAGGGGGGAACCTGCTCGAGAACGCTTTAATCAATTTTACGCATTTGTTTGACAAAATGCTGTTCTTTTTATGAGCTTTCTATCCAATAATGACTATTGTGAGTTCCGTAGACATCCAGTTGTGATTTGATATTGTATGATATTGTGTGATATCTTAGTAATGtgtctctgaaaaaaaaatgccTCAGTCTTTGGAAAGGGTTTATCGTGAAGCGATATGAGCAGATCTGTGTGAATATTCAATGAAGCGTCATGTAGCATAATAAAGGATATAAGAAGAATTACTTTGCGCAAAAACATAATCATGACTGCCAAACTGGAAATGCAATATGCATAGACATTAATCAGAAAGggaaaaataattagtaaattgAGAAGAAATCTGCCTGGTGTGCGTTTCcaaaacaacgacataactcgcgGCTGATCTATCATTgtatgatgcatcatttgggaaacgaacaatgtagtgacgagtgtttcccaaaaccgtagtttcCCTGTCGCAAATCCATCATTTGTACCATGTTAGTTATAGCGTAAAACATCCATAAttatgctctaaacagggtggagtaacaacttctttagaaaaaaaaaacatcatgtttgggcaaataattttgttttacacgcacattaaatgcgtgtgcgtgtaaaacaaaattatttgcccaaacatgatgtttttttttttccaatattagttttggtaaaaacatgcactggtttttcatattaattaaaatatatgtaaacagaACATATAGGGCCAatttttcctttacaaatattaatgagaatattccatattctattctaaagcATAAAACCACTTAGCCACTTAGCTGTGTATTTTTAtctcataaataaattatttaaatcattaatGATTGTAACTTCcaataggctatttattaagaaatgaagaaaaatcaaacttaatattatatatatacaaatctaacttaaatgataatattatatatagaaaagtctactttaacatttacacattcaaaccactgcagaaatgttctaaccaacaggtccatgtcatatacagtacagatacatttcttaataaataacctactataaattaaaagcattaccatatactatatgtttttgttttcacaatttttggagacataacataaattctgcttctaaataataggtcacctgtagctttcgtcatgagccaggactgtgtttaaaatggcataaatgttttcaaagtgcacaatTGTTAATATGAAGACTGCTAAAACTGAattgtaaaaaatactttaaaagcaaattacacctaagagagatgactgtgggggaactggagcacctggaggaaacccacgcgaacactgggagaacatgcaaactccacacagaaatgccaactgacccagctgggacttgaatcagtgacctatttgctgtgaggcgatcgtgctacccactgcgctaccatgATGCATAAATACGTATGCATCTTATaagttaattaatttatgttaaaATTCAAAACCCCAATTCAAAatccataaataaatacatacaaattgtTACACATACATTTACCTGGATGCGTATTTTCAAACCTTTCATTAAACATAGCATAAAACACTTACAGATAACATACAAGTAGCATCCAATTACTATCTAAAACCAAAATCTCCTCCAAGAGCATAtaaacaaacattcgcaaactgtgtcgcaaacttgtACTCTAGAGCTGGAGTTAGAAGTATAATTAGAAATAGAACACAGACAGAagctatgcttctaactacagctctagaggtgtagttgcaaatgtacaagtttgcgatgcaatTTGAGAATGTTCGTTTtcggaaacaccaaatcaactaTGTTTGAGGCGacacaacttgcgaccttagttggatAATAATAgatttcggaaacgcaccccagatctTACGCGGAAACGTTTGTATTTTAcagtttgtcagtttagtggctaattggctAAGTTAAGTCGTTCGAaaatatacgattttaaaaaggaggcgtggcaccaaaccccgcccctaaacccaatcttTATTAAaggagcaaattgtactaaattatacaaatgagactgtacaaattcatacgaattagccactaaatcaaaaagttatgcaTTGCTCTGAGAATGcgtaaaaatatatagtttgttGTATTATAAAAGGATAGTTCATACAAAAGTTAAAATTTGCTGTAAATTATAGGTGACAATTTACTTTGGTAGAACATTAAAGACTGAAtgaaaaactaatgaaaagactaaTGAAAAATTTTTGCTAAAATGTttcataaaatgaaagtaaacagcAACTGGAACCTtgagaataaacaaaaaacaacatatacAGGCAAATTAAAATGAATACGCATGGCTCCTGACAATACTTTGACGTCGAATGAAGCAAAACAGTCAGCCTGGAAGGAAActacaatatttaaaacattataacgTTTAATCTACAGCCTAATGTTACTAAAATGATGAATGAGCTGATCATTATACTTCTTAAGTAGTCAAATTATCATCAGGAGCCAAGaataggcccacatggaatctgcgcgcaGATATCTCATTTAGTCTATTTACTTagttgtataaatgtgtgtgaattaatttcagtaatattattgacaaatatgaaaatgtttaaatgtataatttatttacaatacagtttgtaaagtcatattttctgccTTCATATattagagacttgctttgtttgccaattaagtggatctaattggatttgcactgtaagaattaaataaaattaaaattatattatttttaacttcATATATCAAGTTTTCAGTTTTGATAcccccaaaatcattctgcacgAATACagagattttgttttttaattctgtgctgaaatagcaaaaattgtctgcagattctgtttggccctaACCTTGAGCCATGTAATATTGCCTGAATATTTTGggctgacttgcattttatgaatcacgaAGTACCacaattttgttttcatgttctACCTACACTCTTAAAAATTATAAGACAAAACAAGTCTTgaccacaaatatttttttacgtTACTTATTTTAGTGTTAATCaagtttcaacttttttttttgtaatttatactAAGCTTAACTTcattttttagtcagtttgattgatgaaatttgaaatgactagaaaattgtatttattcaacaacaacaacaaaatagacACCATTTTGAAAGAATTATTTACAGTGCATATTGAAGGATCTGAGCGAGAATAACATaacagcaaatgttcatttttgggtgaactatatcaATAAATCTGCCCAATAAATATTGAAAACATGCCCTCCACCAACAGAATTCCAATCAAATGGTTAGCATATTAAAATAAAGGAAAACTCATTTAACTAATGTAATCTCAGTGTGCAAACACTTTTatatctaaaagaaaaaaataataatcaagtaCACTTTGTATTCTCTATAAACTCTCATACCGTCTGTGATGTATAGAGTTTTGTACAGAGTGTCCTTAACCACAGAGAGTGTGTTTACTATACAAGTATCTGTTTAGATCTTTGATGTCAGTTCAAAATACATGTTCACAATAATCAAGTTTGGATAATTGAGCTAATTGAAActatcagattaaaaaaaaaaaaaaaagtacttttttttataTGTGAGGGTGTGAGGGTGTCAAAGAGCCATAGCCTTTTTTAAAGGTCTGTATAGACTAAACATGCAAACTGAAGGGAGGGATTATGACTGTGATGTTTGACgaaatctttgtgtgtgtgtgtgtgtcaaaaaaGTGTGAAAGTGGTATTATTATTAAGGGGTTTTGGGATGTCGATTTTCGTCTATTTTAATACTCTGTGTTAATTTCTACTCTACGCTGATGACTGCTGATGATGTATCAGTGTAAAATTGTTGTAATTGCCAAACTGGGATAAAATTGCCTTTCTTTGTATGTTTTTACACTGCAGTACTtgtgctgttaaaaaaaacacatcaacaaAGTCACACAATGTGTGTATTGTATCCAACATCGCAAAGACATTGAATCCTCTGAATCTCTTCATGTATATACACCAATATCAAAAAAGCGAAAGCGGCTTGTTTCTGAAAATGAATCGATACCTGCTGTACCTCAGAATCGTTTAAACGCAGTACATTTGTTCACCACCAGGTGGCGCTACCATTCACACGTGGACATTGCAAGCTATACGTCATTTGTTGTCaatataaaacaataagaggGTGACCATGTGTTTCTCTGCAATAAACGTCTAATGTCATAACATATATGCCATAATATATTTAGCGTGGCTTTTTACAGGAAGCAAAGAGGCATGTGATGATCTTCTTAAGTACACAATCAATACAAATGGACTGATCTTAACAGGCTCTATAGTTGAAAGCTATTTATTTCTGGGAAGGGCATAGAAGCATTGAATATAAACATTCAAGTCAGGGTGAAAAGAATGTTTGAGGCTAATAAATGCCTTGCCGTCAAGATTAATTTAAAATTGTAGAAGTAAGCCCTCACAGTGCAGCATTTAAGATACGACTTTTGAACAAAATGTCAATAACTGTTTAAAG

Function

GO:

id name namespace
GO:0099643 signal release from synapse biological_process
GO:0006906 vesicle fusion biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0043010 camera-type eye development biological_process
GO:0051179 localization biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0016185 synaptic vesicle budding from presynaptic endocytic zone membrane biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0061025 membrane fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0070142 synaptic vesicle budding biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0051640 organelle localization biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021977 lncRNA upstream 170980 34319889 ~ 34323007 (+) True XLOC_010081
TCONS_00021976 lncRNA upstream 172608 34315762 ~ 34321379 (+) True XLOC_010080
TCONS_00020024 lncRNA upstream 500528 33992319 ~ 33993459 (+) False XLOC_010076
TCONS_00020020 lncRNA upstream 550259 33939990 ~ 33943728 (+) True XLOC_010073
TCONS_00021975 lncRNA upstream 737608 33752361 ~ 33756379 (+) True XLOC_010070
TCONS_00021979 lncRNA downstream 411081 34913284 ~ 34916253 (+) False XLOC_010086
TCONS_00021980 lncRNA downstream 411084 34913287 ~ 34916253 (+) False XLOC_010086
TCONS_00021982 lncRNA downstream 411086 34913289 ~ 34916253 (+) False XLOC_010086
TCONS_00021981 lncRNA downstream 411086 34913289 ~ 34916253 (+) False XLOC_010086
TCONS_00021983 lncRNA downstream 411132 34913335 ~ 34916253 (+) True XLOC_010086
TCONS_00020031 mRNA upstream 319727 34160835 ~ 34174260 (+) True XLOC_010079
TCONS_00020029 mRNA upstream 358743 34111929 ~ 34135244 (+) False XLOC_010078
TCONS_00020028 mRNA upstream 362016 34111919 ~ 34131971 (+) False XLOC_010078
TCONS_00020030 mRNA upstream 375977 34111963 ~ 34118010 (+) True XLOC_010078
TCONS_00020027 mRNA upstream 437544 34046733 ~ 34056443 (+) True XLOC_010077
TCONS_00020034 mRNA downstream 20774 34522977 ~ 34532805 (+) False XLOC_010083
TCONS_00020035 mRNA downstream 21312 34523515 ~ 34527206 (+) True XLOC_010084
TCONS_00020036 mRNA downstream 26206 34528409 ~ 34531851 (+) False XLOC_010083
TCONS_00020037 mRNA downstream 29283 34531486 ~ 34532888 (+) True XLOC_010083
TCONS_00020040 mRNA downstream 841290 35343493 ~ 35379565 (+) False XLOC_010088
TCONS_00020014 other upstream 737608 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 760609 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020010 other upstream 1150722 33343151 ~ 33343265 (+) True XLOC_010067
TCONS_00019992 other upstream 1821051 32672820 ~ 32672936 (+) True XLOC_010055
TCONS_00019985 other upstream 2297220 32192197 ~ 32196767 (+) True XLOC_010050
TCONS_00020038 other downstream 222365 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020039 other downstream 704652 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020045 other downstream 899858 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020056 other downstream 1223815 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 2080283 36582486 ~ 36584785 (+) False XLOC_010109

Expression Profile

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