RNA id: TU519805



Basic Information


Item Value
RNA id TU519805
length 612
RNA type TUCP
GC content 0.46
exon number 3
gene id CI01000319_05718732_05734284
representative False

Chromosome Information


Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5718332 ~ 5734843 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCGTTATCCCCCATTTCCAGAGCTTGTTTAGGCGTTAACGTTTCACCAGTTCAAAGTCGAAAATTAACACCGACGTTTGGTACAAATATTTCAAGTAATTTCTCTAAAACGATCTTAATCTGAGCTGTCTCTCAGGACTATGCAATGATGCGGTCGTAGTGATTGTGCTTCTTGGAGTTCATCTAGCCTATGCTGGAACACACTCTCTGAAATACTTCTACACTGGTGCGTCTGGAGACATTGACTTCCCAGAGTTCACAGCGGTTGGTCTGGTGGATGATGGGCAGTTCATGTACTTTGACAGCAACATAATGAAAGCTGTGCCAAAGACAGAGTGGATCAGACAGAATGAGGGAGCAGATTACTGGGACAGAGAGACTCAGGGCCTGATTGGAGCCCATCAGGTCTTCAAAAACAACATCCAGATTGTAATGGAACGGTTCAACCAGTCAAAGGGTGTGCACACATTCCAGGAAATGTACGGCTGTGAATGGGATGATCAGACTCGAGCAACAAATGGTTTCATCCAGTACGGTTATGATGGAGAGGACTTTCTGTCTCTGGATTTGAAGGAGATGAGATGGATTTCCCCAGTGCAGCAAGGATTCATCACTGTACAGAAGTGGAACAAAGACAGTGCCTATATTGAGAGTGATAAAAATTATTTCAGCAGCGTGTGCATTGAGTGGCTGAAGAAGTATCTGGAGTATGGAAAGAGCAGCCTGCAGAAAACAGTCTCTCCTCAGGTGTCTCTGTTGCAGAAGGATCCCTCCTCTCCAGTGACATGTCATGCTACAGGATTTTACCCCAGTGGAGTAACAATCACCTGGATGAAAAATGGACAAGAGCATCATGAGGATGTGGATCTTGGTGAACTTCTTCCTAATGAGGACGGAACCTTCCAGAAGACGAGCACCATCAGAGTTACACCTGATGAGTGGAAGAAGAACGAGTTCAGCTGTGTGGTGGAACATCAGGGCAAGACTGTGACAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU519844 lncRNA upstream 30137 5675428 ~ 5678025 (+) True G452769
TU519768 lncRNA upstream 53224 5593404 ~ 5654938 (+) False G452705
TU519770 lncRNA upstream 94293 5593404 ~ 5613869 (+) True G452705
TU519769 lncRNA upstream 109523 5593404 ~ 5598639 (+) False G452705
TU519880 lncRNA upstream 119267 5586786 ~ 5588895 (+) True G452805
TU519900 lncRNA downstream 6157 5739093 ~ 5739474 (+) True G452820
TU519851 lncRNA downstream 13868 5746804 ~ 5747148 (+) True G452776
TU519901 lncRNA downstream 16904 5749840 ~ 5750457 (+) True G452821
TU519821 lncRNA downstream 18782 5751718 ~ 5752959 (+) True G452748
TU519905 lncRNA downstream 122019 5854955 ~ 5855198 (+) True G452825
CI01000319_05684798_05685353.mRNA mRNA upstream 22809 5684416 ~ 5685353 (+) True CI01000319_05684798_05685353
CI01000319_05651284_05669061.mRNA mRNA upstream 36702 5651114 ~ 5671460 (+) True CI01000319_05651284_05669061
CI01000319_05618356_05625888.mRNA mRNA upstream 81395 5618356 ~ 5626767 (+) True CI01000319_05618356_05625888
CI01000319_05435510_05450379.mRNA mRNA upstream 257530 5435229 ~ 5450632 (+) True CI01000319_05435510_05450379
CI01000319_05112104_05116909.mRNA mRNA upstream 591088 5111633 ~ 5117074 (+) True CI01000319_05112104_05116909
CI01000319_05742834_05745945.mRNA mRNA downstream 8395 5741331 ~ 5746141 (+) True CI01000319_05742834_05745945
CI01000319_05796587_05803719.mRNA mRNA downstream 60752 5793688 ~ 5804150 (+) False CI01000319_05796587_05803719
CI01000319_05812788_05816097.mRNA mRNA downstream 79757 5812693 ~ 5816171 (+) True CI01000319_05812788_05816097
CI01000319_05816948_05819499.mRNA mRNA downstream 83889 5816825 ~ 5819499 (+) True CI01000319_05816948_05819499
CI01000319_05828294_05834113.mRNA mRNA downstream 95071 5828007 ~ 5835085 (+) True CI01000319_05828294_05834113
TU519585 other upstream 336678 5359700 ~ 5371484 (+) True G452543
TU519588 other upstream 352127 5353694 ~ 5356035 (+) True G452545
TU519577 other upstream 361168 5339522 ~ 5346994 (+) False G452541
TU519378 other upstream 917633 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519272 other upstream 1172137 4531619 ~ 4533094 (+) True G452260
TU519967 other downstream 389708 6122644 ~ 6124939 (+) True G452884

Expression Profile