RNA id: TCONS_00020047


Basic Information

Item Value
RNA id TCONS_00020047
length 835
RNA type mRNA
GC content 0.55
exon number 2
gene id XLOC_010092
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35535171 ~ 35537491 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTCAAAAAACGCTTGAGAAACTCACGGGCTGTGTTTCAAAACACCGTGTGCTGACTATGCGGACGGCATCAAAAGCGCGTGCAGCATTTCGAGCGCTTGCGATGTCTGAATGCTGTCTAGATAGGCAGCACACTAGGCTTTTGAAACGCCGCCGGTGTTTTAGGGCTCAGGGTGGTTGATCCATTGTTTGCTTCACTGCACGgGAGAGTCTATGGCAGAGCACATGATGATGCCCATGAACCACGGCCAGGGAAACGGGGGTCTGCATGGCTACCGGATGGGCATGAATGGAGGCCTGCAGGCAGGCCCCCAGCAGCACATTCCCCAGTCTGGCTTGAGAGCCATGCCCAATGGACAGATGATGCACTATGGAGCGGGGCCTCAGGGAAACATGGAGGCCGCCATGCGCCAAAGGGCTAACATGGTGGGGCCTATGAATGGACAGATGGGTCACCACCGAATGCAGTCAACTAACATGATGTTCAACAACCAGGGCCAGCCACAGCAGCATCACGTTCAGCAGCATCAACAGCAGCATCAACAGCACCACCACATGCAGCAACAACAGCCTCAACCACCACcgccacaacaacaacaacaacaacagcagcaacagcagTATATGACCGGGGGTCTCACTTCCCAACAGCTCATGGCCAGCATGCACCTTCAGAAACTCAACACACAGTACCACGGGCACCCGTTGGGACACATGAATGGCAACCATATGGGAAATGGGGCGCAATTCCGCATGGGTCAGGCTCAGCTGAGCAACATGCAGCACATGCCCGGCCCAGCTCTCAGTCTTAATGGTATGGATGCTGATTTGATCG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030425-5 Predicted to enable transcription coactivator activity. Acts upstream of or within muscle cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including heart tube; mesoderm; nervous system; neural crest; and pharyngeal arch 3-7. Orthologous to human CITED4 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4).

Ensembl:

ensembl_id ENSDART00000171675

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021979 lncRNA upstream 619122 34913284 ~ 34916253 (+) False XLOC_010086
TCONS_00021984 lncRNA downstream 19060 35555766 ~ 35556976 (+) True XLOC_010093
TCONS_00021729 lncRNA downstream 240969 35777675 ~ 35780839 (+) True XLOC_010097
TCONS_00021730 lncRNA downstream 278683 35815389 ~ 35817061 (+) True XLOC_010098
TCONS_00020063 lncRNA downstream 381333 35918039 ~ 35927160 (+) False XLOC_010100
TCONS_00021985 lncRNA downstream 496712 36033418 ~ 36038394 (+) True XLOC_010101
TCONS_00020044 mRNA upstream 129495 35401543 ~ 35405880 (+) False XLOC_010091
TCONS_00020043 mRNA upstream 136863 35395597 ~ 35398512 (+) True XLOC_010090
TCONS_00020042 mRNA upstream 152253 35379720 ~ 35383122 (+) True XLOC_010089
TCONS_00020040 mRNA upstream 155810 35343493 ~ 35379565 (+) False XLOC_010088
TCONS_00020049 mRNA downstream 57079 35593785 ~ 35644751 (+) False XLOC_010094
TCONS_00020051 mRNA downstream 57079 35593785 ~ 35644767 (+) False XLOC_010094
TCONS_00020050 mRNA downstream 57079 35593785 ~ 35644767 (+) False XLOC_010094
TCONS_00020052 mRNA downstream 57964 35594670 ~ 35636433 (+) False XLOC_010094
TCONS_00020053 mRNA downstream 58606 35595312 ~ 35644767 (+) True XLOC_010094
TCONS_00020045 other upstream 129488 35402061 ~ 35405887 (+) True XLOC_010091
TCONS_00020039 other upstream 254587 35206855 ~ 35280788 (+) True XLOC_010087
TCONS_00020038 other upstream 810693 34724568 ~ 34724682 (+) True XLOC_010085
TCONS_00020014 other upstream 1778996 33752102 ~ 33756379 (+) False XLOC_010070
TCONS_00020013 other upstream 1801997 33719969 ~ 33733378 (+) True XLOC_010069
TCONS_00020056 other downstream 189312 35726018 ~ 35726132 (+) True XLOC_010096
TCONS_00020068 other downstream 1045780 36582486 ~ 36584785 (+) False XLOC_010109
TCONS_00020072 other downstream 1211900 36748606 ~ 36749324 (+) False XLOC_010112
TCONS_00020082 other downstream 2234777 37771483 ~ 37771600 (+) True XLOC_010119
TCONS_00020086 other downstream 2484313 38021019 ~ 38021134 (+) True XLOC_010122

Expression Profile

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