RNA id: TU518579


Basic Information

Item Value
RNA id TU518579
length 696
RNA type TUCP
GC content 0.52
exon number 2
gene id G451662
representative True

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 3333281 ~ 3334824 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGCATCACATTGTCCATCTGTTCTCTAAATTTCATCATTATCGCCGCCCATTAAAAAAGCCATTTTTCTCCCATGTTTTCCACAATGCACATTGTTTAGATTTGACTTTACAGAATGTTCAGAAGCTTCATATTAATTTTCAACACTATTGAAACACTTAAATACTCTATCCTGTTGATAAGTTTGTCATCAATGGTAGCCATTACCCATGATGCACTGCTCACCTGTCTCTGCAGACGCAGGTTTTCCTCCTGCTCGGCTCTTGCTCGCTCCTGCGCCTCCTTCTCCTCCTGCAGACGCTGCTGCTCTGCCATGAAGCGCGCCTCCTCCTCCCTGCGCCTCCTCTCCTCCTCCTCACGTCTGGCGTGTTCCTCACGCAGCTCTCTGCTCTTCTGCTCCTGCTCTCGTCTCTCTTGCTCCTCCTTCTCTCTCTGCTCACGTGCCTGACGTCTCTTTTCTGCCAAAACCCTGGCCGCCTCCTCTGGATCATTGGTCCCAGCTGTGGGCTTGGCAGCCGGAGGGCCGGGTTCAGGAGAGAGCGATCGAGAAGGAGCGGCGGCTACAATAGGCACCGCCTCTGGTGTCTGAGAAACTGCTGTGATTGGTGCAGAGGTAGTGAGGGGCGTGGCCGGAGCAGAGGAGACAGTGATGTCAGGAACACTAAGAGCAGCTAAACAGAAAAAACAGTCCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU518583 lncRNA upstream 4269 3294651 ~ 3329012 (+) True G451663
TU518595 lncRNA upstream 21341 3211189 ~ 3311940 (+) False G451667
TU518594 lncRNA upstream 21341 3214676 ~ 3311940 (+) False G451667
TU518593 lncRNA upstream 21341 3214905 ~ 3311940 (+) True G451667
TU518618 lncRNA upstream 74113 3172160 ~ 3259168 (+) True G451682
TU518590 lncRNA downstream 15915 3350739 ~ 3375767 (+) False G451666
TU518591 lncRNA downstream 15915 3350739 ~ 3355184 (+) True G451666
TU518692 lncRNA downstream 41605 3376429 ~ 3376706 (+) True G451741
TU519024 lncRNA downstream 61265 3396822 ~ 3397035 (+) True G452044
TU519034 lncRNA downstream 69373 3404197 ~ 3406068 (+) False CI01000319_03402932_03447997
CI01000319_03307678_03308097.mRNA mRNA upstream 24818 3306484 ~ 3308463 (+) True CI01000319_03307678_03308097
CI01000319_03295425_03299640.mRNA mRNA upstream 32605 3295425 ~ 3300676 (+) True CI01000319_03295425_03299640
CI01000319_03283470_03293866.mRNA mRNA upstream 39355 3283431 ~ 3293926 (+) True CI01000319_03283470_03293866
CI01000319_03238023_03240147.mRNA mRNA upstream 92998 3238023 ~ 3240283 (+) True CI01000319_03238023_03240147
CI01000319_03139476_03152542.mRNA mRNA upstream 180711 3139373 ~ 3152570 (+) True CI01000319_03139476_03152542
CI01000319_03389749_03391750.mRNA mRNA downstream 54925 3389749 ~ 3391991 (+) True CI01000319_03389749_03391750
CI01000319_03394244_03396334.mRNA mRNA downstream 59420 3394244 ~ 3396490 (+) False CI01000319_03394244_03396334
CI01000319_03402932_03447997.mRNA mRNA downstream 67288 3402112 ~ 3448275 (+) False CI01000319_03402932_03447997
CI01000319_03483504_03487172.mRNA mRNA downstream 146159 3480983 ~ 3488654 (+) True CI01000319_03483504_03487172
CI01000319_03500024_03502600.mRNA mRNA downstream 164448 3499272 ~ 3502830 (+) False CI01000319_03500024_03502600
TU518612 other upstream 103950 3216340 ~ 3229331 (+) True G451677
TU518373 other upstream 494332 2838086 ~ 2838949 (+) True G451500
TU518358 other upstream 588758 2742741 ~ 2744523 (+) True G451485
TU518198 other upstream 841988 2467916 ~ 2491293 (+) False G451357
TU519028 other downstream 67626 3403855 ~ 3404053 (+) True G452048
TU519020 other downstream 79357 3414181 ~ 3420600 (+) True G452040
TU519023 other downstream 164502 3500279 ~ 3500512 (+) True G452043
TU519272 other downstream 1196795 4531619 ~ 4533094 (+) True G452260
TU519378 other downstream 1452216 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609

Expression Profile