RNA id: TU519315


Basic Information

Item Value
RNA id TU519315
length 245
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G452300
representative True

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 4447789 ~ 4448033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCAAGGCTGCATTAATTTAGAAAAATTCAAAATACAGTAATAGTAGTAATAGCCTATTGTGAAATATTATAATTTCAAATAACTGTCTATTTCAATGTATTTAAAAATATCTTCTTTTTTTTTCCTGTGATGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGATGCTCAAGAAATATTTACCATCATATAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU519314 lncRNA upstream 1064 4446491 ~ 4446725 (+) True G452299
TU519313 lncRNA upstream 1592 4445963 ~ 4446197 (+) True G452298
TU519312 lncRNA upstream 2474 4444567 ~ 4445315 (+) True G452297
TU519202 lncRNA upstream 178329 4268771 ~ 4269460 (+) True G452209
TU519098 lncRNA upstream 759420 3688142 ~ 3688369 (+) True G452113
TU519282 lncRNA downstream 1356 4449389 ~ 4452465 (+) True G452267
TU519321 lncRNA downstream 29062 4477095 ~ 4477333 (+) True G452306
TU519277 lncRNA downstream 67278 4515311 ~ 4515695 (+) False CI01000319_04515268_04534770
TU519292 lncRNA downstream 68659 4516692 ~ 4518033 (+) True G452277
TU519324 lncRNA downstream 100574 4548607 ~ 4548821 (+) True G452309
CI01000319_04424107_04437627.mRNA mRNA upstream 9942 4423822 ~ 4437847 (+) True CI01000319_04424107_04437627
CI01000319_04002430_04030246.mRNA mRNA upstream 417426 4002430 ~ 4030363 (+) True CI01000319_04002430_04030246
CI01000319_03873107_03926475.mRNA mRNA upstream 520700 3871586 ~ 3927089 (+) True CI01000319_03873107_03926475
CI01000319_03839724_03847827.mRNA mRNA upstream 598866 3839682 ~ 3848923 (+) True CI01000319_03839724_03847827
CI01000319_03786208_03790365.mRNA mRNA upstream 656789 3786208 ~ 3791000 (+) True CI01000319_03786208_03790365
CI01000319_04478393_04509691.mRNA mRNA downstream 30360 4478393 ~ 4510337 (+) True CI01000319_04478393_04509691
CI01000319_04515268_04534770.mRNA mRNA downstream 67235 4515268 ~ 4534902 (+) False CI01000319_04515268_04534770
CI01000319_04536287_04545417.mRNA mRNA downstream 88254 4536287 ~ 4546868 (+) True CI01000319_04536287_04545417
CI01000319_04550077_04553516.mRNA mRNA downstream 100936 4548969 ~ 4555108 (+) True CI01000319_04550077_04553516
CI01000319_04581466_04584558.mRNA mRNA downstream 133433 4581466 ~ 4584565 (+) True CI01000319_04581466_04584558
TU519023 other upstream 903070 3500279 ~ 3500512 (+) True G452043
TU519020 other upstream 1027189 3414181 ~ 3420600 (+) True G452040
TU519028 other upstream 1043736 3403855 ~ 3404053 (+) True G452048
TU518579 other upstream 1112965 3333281 ~ 3334824 (+) True G451662
TU518612 other upstream 1218458 3216340 ~ 3229331 (+) True G451677
TU519272 other downstream 83586 4531619 ~ 4533094 (+) True G452260
TU519378 other downstream 339007 4787040 ~ 4790529 (+) True CI01000319_04787066_04788609
TU519577 other downstream 891489 5339522 ~ 5346994 (+) False G452541
TU519588 other downstream 905661 5353694 ~ 5356035 (+) True G452545
TU519585 other downstream 911667 5359700 ~ 5371484 (+) True G452543

Expression Profile